G173869


Basic Information

Item Value
gene id G173869
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66621592 ~ 66622003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU197738
aatttcgtggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcgtgcgtcctccgatacacaacccaaccaagccgcactgattcttaacacagcgcacatccaacccggaagccagccgcaccaatgcgccggaggaaacactgtgcacctggccaccttggttagcgcacactgcgcccagcccgccacaggagtcgaggacacccctaccgaccaagccctccctaacccgggcaacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccagactctgatggcacagctggcgctgcagtacagcgcccttaaccactgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197738 True 412 lncRNA 0.60 1 66621592 66622003

Neighbor

gene id symbol gene type direction distance location
vps9d1 LOC106560896 coding upstream 10002 66586399 ~ 66611590 (+)
LOC110494295 fanca coding upstream 39941 66555547 ~ 66581651 (+)
LOC110494286 LOC106560898 coding upstream 69235 66549545 ~ 66552357 (+)
LOC110494278 chmp1a coding upstream 74264 66537955 ~ 66547328 (+)
LOC110494260 LOC106560901 coding upstream 92031 66508242 ~ 66529561 (+)
LOC110494358 LOC106560893 coding downstream 34841 66656844 ~ 66665610 (+)
LOC110494385 cotl1 coding downstream 55751 66677754 ~ 66688505 (+)
meak7 tldc1 coding downstream 83299 66705302 ~ 66711432 (+)
LOC110501804 plcg2 coding downstream 95183 66717186 ~ 66731976 (+)
foxl1 LOC106560889 coding downstream 203244 66825247 ~ 66828635 (+)
G173868 NA non-coding upstream 317 66621040 ~ 66621275 (+)
G173840 NA non-coding upstream 3910 66615365 ~ 66617682 (+)
G173844 NA non-coding upstream 6391 66614373 ~ 66615201 (+)
G173843 NA non-coding upstream 7431 66612644 ~ 66614161 (+)
G173835 NA non-coding upstream 86145 66535214 ~ 66535447 (+)
G173870 NA non-coding downstream 341 66622344 ~ 66622580 (+)
G173888 NA non-coding downstream 22296 66644299 ~ 66644534 (+)
G173889 NA non-coding downstream 23416 66645419 ~ 66645625 (+)
G173890 NA non-coding downstream 23800 66645803 ~ 66646013 (+)
G173893 NA non-coding downstream 27799 66649802 ~ 66650216 (+)
LOC110494096 LOC106561115 other upstream 355569 66262594 ~ 66266024 (+)
G172639 NA other upstream 685459 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 980616 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 1084805 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2743359 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 119817 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 333521 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 616887 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 864160 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2238835 68860838 ~ 68861368 (+)

Expression


Co-expression Network