G175004


Basic Information

Item Value
gene id G175004
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67488479 ~ 67489837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU198977
tgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacattgagagactgaaattttttcccattcctccttgcaaaacagcttgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattagattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgatttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgttgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgatgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactgcactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgagagacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggtgctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaatttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaag

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198977 True 1150 lncRNA 0.58 2 67488479 67489837

Neighbor

gene id symbol gene type direction distance location
si:dkey-246g23.2 LOC106560875 coding downstream 2453 67403141 ~ 67486026 (-)
LOC110501813 LOC106560876 coding downstream 133757 67349284 ~ 67354722 (-)
LOC110494509 LOC106560876 coding downstream 184340 67302200 ~ 67304139 (-)
si:dkey-246g23.4 LOC106560877 coding downstream 207191 67265455 ~ 67281288 (-)
LOC110494484 wfdc1 coding downstream 237056 67240045 ~ 67251423 (-)
zgc:173742 LOC106560872 coding upstream 1592 67491429 ~ 67523791 (-)
cdh13 LOC106560870 coding upstream 176349 67666186 ~ 68192893 (-)
lonp2 lonp2 coding upstream 1461500 68951337 ~ 68977698 (-)
il34 il-34 coding upstream 1490573 68980410 ~ 69003899 (-)
sf3b3 sf3b3 coding upstream 1520013 69009850 ~ 69059398 (-)
G174977 NA non-coding downstream 65486 67422266 ~ 67422993 (-)
G174937 NA non-coding downstream 120879 67367370 ~ 67367600 (-)
G174934 NA non-coding downstream 122991 67365288 ~ 67365488 (-)
G174933 NA non-coding downstream 123223 67364920 ~ 67365256 (-)
G174904 NA non-coding downstream 171493 67316723 ~ 67316986 (-)
G175064 NA non-coding upstream 70315 67560152 ~ 67560392 (-)
G175092 NA non-coding upstream 90443 67580280 ~ 67580484 (-)
G175115 NA non-coding upstream 108502 67598339 ~ 67598548 (-)
G175549 NA non-coding upstream 128990 67618827 ~ 67619342 (-)
G175552 NA non-coding upstream 132037 67621874 ~ 67622252 (-)
G174505 NA other downstream 795629 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 1097713 66375226 ~ 66390766 (-)
G173675 NA other downstream 1150093 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 1190165 66277821 ~ 66299637 (-)
G173431 NA other downstream 1566250 65921850 ~ 65922229 (-)
G177487 NA other upstream 2101298 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2203772 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3070685 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3279321 70769140 ~ 70773282 (-)
G179215 NA other upstream 3415535 70905372 ~ 70906254 (-)

Expression


Co-expression Network