G176339


Basic Information

Item Value
gene id G176339
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68598588 ~ 68599116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU200373
gtcaggggctagggtcagtcagttactgtatatctggtgtaattctcctgtcttatctggtgtcctgtgtgaatttaagtatcctccctctaattctctctctctccctatctccctcccaggggacctgagccctaggaccatgcctcaggactacctggcctgatgagtccttgctgtccccagtccacctggctgtgctgctgctccagtttaaactgttctgcctgtggctagggaaccctgacctgttcaccggatgtgctacctgtcccggacctgctgttttctactctctctctctaccgcaccttctgtctcgacctctgaatgctcggctatgaaaagccaactgacatttactcctgaggtactgacctgttgcaccctctacaaccactgtgatcatcttgaagaacaatctggccttgtacatggccatgtactcttataatctccacccggcacagccagaagaggactggccacccctcagagcctggttcctctctaggtttcttcctaggtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU200373 True 529 lncRNA 0.52 1 68598588 68599116

Neighbor

gene id symbol gene type direction distance location
si:ch211-212o1.2 LOC106560866 coding upstream 5729 68553754 ~ 68592859 (+)
LOC110501822 znf423 coding upstream 47122 68403659 ~ 68551466 (+)
LOC110494554 LOC106560874 coding upstream 1061613 67524410 ~ 67536975 (+)
hsbp1b LOC106561110 coding upstream 1110383 67486128 ~ 67488205 (+)
LOC110494472 utp4 coding upstream 1358686 67232278 ~ 67239902 (+)
cbln1 cbln1 coding downstream 46359 68645475 ~ 68653500 (+)
LOC110494586 n4bp1 coding downstream 284053 68883169 ~ 68909472 (+)
siah1 siah1 coding downstream 321585 68920701 ~ 68947106 (+)
LOC118941448 LOC107672167 coding downstream 364668 68963784 ~ 68968557 (+)
st3gal2 st3gal2 coding downstream 486237 69069631 ~ 69093075 (+)
G176333 NA non-coding upstream 3867 68594517 ~ 68594721 (+)
G176332 NA non-coding upstream 5135 68593199 ~ 68593453 (+)
G176185 NA non-coding upstream 35258 68562937 ~ 68563330 (+)
G176068 NA non-coding upstream 283335 68314974 ~ 68315253 (+)
G176049 NA non-coding upstream 295590 68302733 ~ 68302998 (+)
G176351 NA non-coding downstream 7484 68606600 ~ 68606973 (+)
G176381 NA non-coding downstream 37144 68636260 ~ 68636466 (+)
G176391 NA non-coding downstream 55158 68654274 ~ 68654532 (+)
G176421 NA non-coding downstream 59253 68658369 ~ 68658588 (+)
G176428 NA non-coding downstream 63059 68662175 ~ 68662385 (+)
LOC110494451 zfpm1 other upstream 1626133 66900017 ~ 66995521 (+)
G173938 LOC106573687 other upstream 1856375 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 2332565 66262594 ~ 66266024 (+)
G176612 LOC100846954 other downstream 261722 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 357147 68956263 ~ 68957886 (+)
G177067 NA other downstream 857442 69456558 ~ 69457433 (+)
G177812 NA other downstream 1508170 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 2196294 70794530 ~ 70905277 (+)

Expression


Co-expression Network