G176494


Basic Information

Item Value
gene id G176494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68733570 ~ 68801279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU200544
tttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgtttttttatcaggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggagggtagtgttttttattgggcacagtggagggtagtgtgttttttatcaggcacagtggaaggtagtgtgtttttttatcaggcacagtggagggtagtgtgtttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtgtgttttttcCCTGGTTTACATTTGCTTTGCTGCTCGTATTTTTCATATAAATAACGTCTTGACTTACTTTTGAAGTggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgtttttttattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtgtgttttttcC
>TU200538
gtggaaggtagtgtgtttttttattgggcacagtggagggtagtgtttttttattgggcacagtggAAGGTAGTGTGTTATTTTATCAGGCAcagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgtttttttattgggcacagtggagggtagtgtgtttttttattgggcacattggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgtttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtgtgttttttcCCTGGTTTACATTTGCTTTGCTGCTCGTATTTTTCATATAAATAACGGcttgacttacttttgatattagcctaataaagtttagaaatgtttgtgaaGGTTTGGTATGGTGTGGCTAATATTAAGCTTTAGCTACACCAGGCCTATGATATGAAGGCAGTGCACCCTGGTATTCCAACTGTCTCTGACAGTTGAGCTTGAGGTGAGAAAAACTGTTCAGGCCTACCAGAGTTACTCCAATAATCGAACAATGTAATGCTTTATACTAAATATTCTGATAGAAAATGTACGACTTAGCCGCCCTTCTGTGTGTCTAGATCTTTATAGCAGACGCAGTAAGCATCTGCCGTAAAGACATGCATGTCGGTGTCGTTGCATGCCACCGGCATATTTCTATCGCTCTCTATCTTTTTGGGGTTAGGCCTATGCCTCTTTTCCTTTATACAGGTTATATATAGCGACTAAAATGTTCATATCATACAGAGGACATCTAAGCCTATAGGTCTATGCATACATATATTGCTCAAATCTCGGGCAGCTTAACTGTGAGGTGGACAATTATTGTTTGAGGAAAGTAGcctaaaaaacaataaaaaatggtCTATAAAGTTTTGCATATGCTACACATCGATACACAAGGAAAGTGTTATTG
>TU200540
cagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgtttttttatcaggcacagtggagggtagtgtgtttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttcattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgttttttatcaggcacagtggaaggtagtgtgtttttttatcaggcacagtggagggtagtgtgtttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggagggtagtgtgttttttattgggcacagtggaaggtagtgtgttttttcattgggcacagtggaaggtagtgtgttttttatcaggcacagtggaaggtagtttgttttttcattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200544 False 978 lncRNA 0.43 5 68733570 68737234
TU200538 False 1461 lncRNA 0.53 4 68733873 68738292
TU200540 True 566 lncRNA 0.43 3 68734696 68801279

Neighbor

gene id symbol gene type direction distance location
cbln1 cbln1 coding upstream 80070 68645475 ~ 68653500 (+)
si:ch211-212o1.2 LOC106560866 coding upstream 140711 68553754 ~ 68592859 (+)
LOC110501822 znf423 coding upstream 182104 68403659 ~ 68551466 (+)
LOC110494554 LOC106560874 coding upstream 1196595 67524410 ~ 67536975 (+)
hsbp1b LOC106561110 coding upstream 1245365 67486128 ~ 67488205 (+)
LOC110494586 n4bp1 coding downstream 81890 68883169 ~ 68909472 (+)
siah1 siah1 coding downstream 119422 68920701 ~ 68947106 (+)
LOC118941448 LOC107672167 coding downstream 162505 68963784 ~ 68968557 (+)
st3gal2 st3gal2 coding downstream 284074 69069631 ~ 69093075 (+)
exosc6 exosc6 coding downstream 310784 69112063 ~ 69113805 (+)
G176481 NA non-coding upstream 11274 68722005 ~ 68722296 (+)
G176468 NA non-coding upstream 26548 68706820 ~ 68707022 (+)
G176466 NA non-coding upstream 28722 68704508 ~ 68704848 (+)
G176462 NA non-coding upstream 33409 68699948 ~ 68700161 (+)
G176428 NA non-coding upstream 71185 68662175 ~ 68662385 (+)
G176583 NA non-coding downstream 9531 68810810 ~ 68811228 (+)
G176717 lonp2 non-coding downstream 119466 68920745 ~ 68968053 (+)
G176724 lonp2 non-coding downstream 150068 68951347 ~ 68952410 (+)
G176751 NA non-coding downstream 177761 68979040 ~ 68979298 (+)
G176752 NA non-coding downstream 180053 68981332 ~ 69003884 (+)
LOC110494472 utp4 other upstream 1493674 67232278 ~ 67239902 (+)
LOC110494451 zfpm1 other upstream 1761115 66900017 ~ 66995521 (+)
G173938 LOC106573687 other upstream 1991357 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 2467547 66262594 ~ 66266024 (+)
G176612 LOC100846954 other downstream 59559 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 154984 68956263 ~ 68957886 (+)
G177067 NA other downstream 655279 69456558 ~ 69457433 (+)
G177812 NA other downstream 1306007 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 1994131 70794530 ~ 70905277 (+)

Expression


Co-expression Network