G176612 (LOC100846954)


Basic Information

Item Value
gene id G176612
gene name LOC100846954
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68860838 ~ 68861368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU200669
attgtagacctacacaaggctggaatgggctacaagaccatcgacaaacagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaagaactgtcaatctccctcggcctggggctccatgcaagatctcacctcgtggagttgcaatgatcatgagaacagggaggaatcagcccagaactacacgggaggatcttgtcaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatattcatgcccgtctgaagtttgccaatgaacatctgaatgattcagaggacaactgggtgaaagtgttgtggtcagatgagaccaaaatggagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctattaccccaagaacaccattcccaccgtcaaacatgtaggtggaaac

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200669 True 531 TUCP 0.49 1 68860838 68861368

Neighbor

gene id symbol gene type direction distance location
cbln1 cbln1 coding upstream 207338 68645475 ~ 68653500 (+)
si:ch211-212o1.2 LOC106560866 coding upstream 267979 68553754 ~ 68592859 (+)
LOC110501822 znf423 coding upstream 309372 68403659 ~ 68551466 (+)
LOC110494554 LOC106560874 coding upstream 1323863 67524410 ~ 67536975 (+)
hsbp1b LOC106561110 coding upstream 1372633 67486128 ~ 67488205 (+)
LOC110494586 n4bp1 coding downstream 21801 68883169 ~ 68909472 (+)
siah1 siah1 coding downstream 59333 68920701 ~ 68947106 (+)
LOC118941448 LOC107672167 coding downstream 102416 68963784 ~ 68968557 (+)
st3gal2 st3gal2 coding downstream 223985 69069631 ~ 69093075 (+)
exosc6 exosc6 coding downstream 250695 69112063 ~ 69113805 (+)
G176583 NA non-coding upstream 49610 68810810 ~ 68811228 (+)
G176494 NA non-coding upstream 59559 68733570 ~ 68801279 (+)
G176534 NA non-coding upstream 64099 68796267 ~ 68796739 (+)
G176481 NA non-coding upstream 138542 68722005 ~ 68722296 (+)
G176468 NA non-coding upstream 153816 68706820 ~ 68707022 (+)
G176717 lonp2 non-coding downstream 59377 68920745 ~ 68968053 (+)
G176724 lonp2 non-coding downstream 89979 68951347 ~ 68952410 (+)
G176751 NA non-coding downstream 117672 68979040 ~ 68979298 (+)
G176752 NA non-coding downstream 119964 68981332 ~ 69003884 (+)
G176801 NA non-coding downstream 147030 69008398 ~ 69008682 (+)
LOC110494472 utp4 other upstream 1620942 67232278 ~ 67239902 (+)
LOC110494451 zfpm1 other upstream 1888383 66900017 ~ 66995521 (+)
G173938 LOC106573687 other upstream 2118625 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 2594815 66262594 ~ 66266024 (+)
G176725 lonp2 other downstream 94895 68956263 ~ 68957886 (+)
G177067 NA other downstream 595190 69456558 ~ 69457433 (+)
G177812 NA other downstream 1245918 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 1934042 70794530 ~ 70905277 (+)
LOC110495604 LOC106573778 other downstream 3198349 72059717 ~ 72065199 (+)

Expression


Co-expression Network