G176779


Basic Information

Item Value
gene id G176779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69115470 ~ 69116702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU200859
taacttggctttcaaagactttagataggcagggcaggatggatataggtctgtaacagtttgggtctagagtgtcacccaaTTTAAAGAGAGgtatgaccgcggcagctttccaatctttaggaatctcggacggtacgaaagagaggttgaacagactggtaataggggttgcaacaatggaggcggatcattttagaaagagagggtccaaattgtgaagcccagctgatttgtccAGGTTTTGCCTCTAttaggacatctgctatctggatgttggtgaaggagaagctggagaggcttgggcaagtagctgcgggggtgcggagctgttggccggggttggggtagcccggaggaaagcatggccagccgtagagaaatgcttattgaaattctcgactATCGTGGATTtctcagtggtgacagtgtttcctagcctcagtgcagtgggcatctgggaggaggtgctcttgttttccatggactttacagtgtcccaaaactttttggagttagagctacaggatgcaaatttctgtttgaaaaagctagcctttgctttcctgactgactgcatgtattggttcctgacttccctgaaaagttgcatatcgtggggactattcgatgctaatgatgtttttgtgctggtcgagggcagtcaggtctggagtgaaccatgggctatatctgttcctagttctacatttttttaaagggacatgcttatttaagatggtgaggaaattacttttagtagcagcagtggtgggggggggtcaatgtaaatcatccggtggcgatttttatgaattgttcagcagtctaatggcttgggggtagaagctgttgacttggcactctggtaccacttgccatgcggcaTCAGAGAAAACAaactataacttgggtgactggagccttgggtgactggagtctgacaagtGTCTTCAGACTCTGTAATAGCAACGTTTTTGCAGTGTATTTCTGGGaaagaccacacacacagtaaatagtTCAATCTGGTTTGCTGCCAGAAATGACCAAGTTGTGACCATGTGCTGCTATGTGCTACTACAGTATGTGCTGCTATGTGCTACTACAGTATGTGCTGCTATTTGCTGCTATAGTATTTGCTGCTATGTGCTACTATGTGCTACTACAGTATgtgtacgcccaatttttcagttttcgatttgttaaaaaagtttgaaatatccaataaatgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200859 True 1233 lncRNA 0.47 1 69115470 69116702

Neighbor

gene id symbol gene type direction distance location
exosc6 exosc6 coding upstream 1665 69112063 ~ 69113805 (+)
st3gal2 st3gal2 coding upstream 22395 69069631 ~ 69093075 (+)
LOC118941448 LOC107672167 coding upstream 146913 68963784 ~ 68968557 (+)
siah1 siah1 coding upstream 168364 68920701 ~ 68947106 (+)
LOC110494586 n4bp1 coding upstream 205998 68883169 ~ 68909472 (+)
trnal-cag NA coding downstream 18081 69134783 ~ 69134865 (+)
psme3ip1 LOC106560853 coding downstream 50093 69166795 ~ 69176697 (+)
LOC110494820 NA coding downstream 198866 69315568 ~ 69325990 (+)
b3gnt9 LOC106560847 coding downstream 209405 69326107 ~ 69332525 (+)
LOC110494892 LOC106560841 coding downstream 481895 69598438 ~ 69608770 (+)
G176801 NA non-coding upstream 106788 69008398 ~ 69008682 (+)
G176752 NA non-coding upstream 111586 68981332 ~ 69003884 (+)
G176751 NA non-coding upstream 136172 68979040 ~ 68979298 (+)
G176717 lonp2 non-coding upstream 147417 68920745 ~ 68968053 (+)
G176856 NA non-coding downstream 3133 69119835 ~ 69120585 (+)
G176857 NA non-coding downstream 3966 69120668 ~ 69120954 (+)
G176858 LOC106560856 non-coding downstream 4342 69121044 ~ 69121339 (+)
G176859 LOC106560856 non-coding downstream 4830 69121532 ~ 69122730 (+)
G176861 NA non-coding downstream 8233 69124935 ~ 69125665 (+)
G176725 lonp2 other upstream 157584 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 254102 68860838 ~ 68861368 (+)
hsbp1b LOC106561110 other upstream 1627269 67486128 ~ 67488205 (+)
LOC110494472 utp4 other upstream 1875574 67232278 ~ 67239902 (+)
LOC110494451 zfpm1 other upstream 2143015 66900017 ~ 66995521 (+)
G177067 NA other downstream 339856 69456558 ~ 69457433 (+)
G177812 NA other downstream 990584 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 1678708 70794530 ~ 70905277 (+)
LOC110495604 LOC106573778 other downstream 2943015 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 other downstream 3136736 72250884 ~ 72253809 (+)

Expression


Co-expression Network