G177834


Basic Information

Item Value
gene id G177834
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69629853 ~ 69638176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU202014
AATGATTAAAAACACAAAAGCACACTGTTTTATTTCGTTAACATCTACACCAACATAAAAATTATACTTTTGTGTGAATACAAAAGGTTTCATGTCACAACGTTATAAATCTGTAAGAATAAAAAAGTTGACAGAAAAAGATGAATAACATTATCTTTATTTTCTATACAGATCAATATTCAAATGTTTAGTACCACTGGGCACTCTGTTTAAAGGTAGGTGCAGTGAAATCCTGCTTGCCACTTTTCCTCTGCCCAGACTGAACTCACAGAGACAGTCCTTGGTCGCCACACACAGGTTGTTGGGATTTAATTGTAAATGAAGTTGAACCTGCAACAAAAATAAAAGGTTGTATTGTGAATATACAAACTAATCTAAAAACAATGCACATCTGTCCATCTTCAAGCTGAATTCATTGAATTGTGTCTTATGAATTACAGTATTTCATATTATGGTGAATATACAGGAGTACCTTACCTGCTCACAAGCTGTGGGAGACGGGATATGATTGGCTCGTGGCCTGGTGCATTGTCATACAGCTCAAACAGAGGGGCAGTCACCAGGTTATAGTTATTGGGCACTGCAAAGTGCTGGGAGGCATGTGGGAGACGTCAATATCCACATCTGCTCACTGCAGAGTAGATCAACATAATAACTACACACCAACATGTGATCATCTGCTTAACTACTCCATCATGGTTGCAACCACAGCCACCAGCATCAATCAATCGATATGAACTATGTTACAGTCAAACATTACATTTTTCCTGCAAGTGAAAAAGGAAGAGATTATTGTGCTCCTTGGGTTTGGTCATGTGTGCTGGGATGTAGGGGCACTGTAGAGAAAACAGAAAAACACATACTTCACAGATTCTCATGACATGGATTTTTATATATTCAAATTCAAAAAGGTCAGCATAGGTGTGAAAGGCTATGGAAACCAAGAGACCGGGGACAGGTCACCATTAGAGTAAGATGACAGGAAGGACAGCACACccaactcaaatcaaattgtattggtcacatacacatggatagcagatgttaGTGTAGCAAaaggcttgtgcttctagttcggacagtgcagcaatatctaacaattccacaactacctaa

Function

NR:

description
cleavage and polyadenylation specific factor 5-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202014 True 1116 lncRNA 0.39 2 69629853 69638176

Neighbor

gene id symbol gene type direction distance location
LOC110492400 NA coding downstream 44961 69578169 ~ 69584892 (-)
gnao1a LOC106560843 coding downstream 80170 69411769 ~ 69549683 (-)
LOC110494854 LOC106560844 coding downstream 240160 69353662 ~ 69389693 (-)
LOC110494832 LOC106560845 coding downstream 287787 69331023 ~ 69342066 (-)
nup93 nup93 coding downstream 320949 69276978 ~ 69308904 (-)
LOC110494902 LOC106560839 coding upstream 10657 69648833 ~ 69767366 (-)
LOC110494926 LOC106560838 coding upstream 137751 69775927 ~ 69827479 (-)
LOC110501833 LOC106560836 coding upstream 196456 69834632 ~ 69870691 (-)
LOC110494911 LOC106560835 coding upstream 232625 69870801 ~ 69892079 (-)
trnav-aac NA coding upstream 293353 69931529 ~ 69931601 (-)
G177486 NA non-coding downstream 38802 69590667 ~ 69591051 (-)
G177428 NA non-coding downstream 86970 69542375 ~ 69542883 (-)
G177353 NA non-coding downstream 171558 69439847 ~ 69458295 (-)
G177333 NA non-coding downstream 264001 69365112 ~ 69365852 (-)
G177323 NA non-coding downstream 303025 69326308 ~ 69326828 (-)
G177841 NA non-coding upstream 20038 69658214 ~ 69658952 (-)
G177851 NA non-coding upstream 37941 69676117 ~ 69676387 (-)
G177853 NA non-coding upstream 40423 69678599 ~ 69678931 (-)
G177855 NA non-coding upstream 41828 69680004 ~ 69680293 (-)
G177857 NA non-coding upstream 43871 69682047 ~ 69682328 (-)
G177487 NA other downstream 38131 69591135 ~ 69591722 (-)
G174505 NA other downstream 2937003 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3239087 66375226 ~ 66390766 (-)
G173675 NA other downstream 3291467 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 3331539 66277821 ~ 66299637 (-)
LOC110501848 NA other upstream 922346 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1130982 70769140 ~ 70773282 (-)
G179215 NA other upstream 1267196 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 1288514 70926632 ~ 70945359 (-)

Expression


Co-expression Network