G178335


Basic Information

Item Value
gene id G178335
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70325835 ~ 70327350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU202593
TGGCTTTCTGTACAAAAGATACGCTTCTACTGAAGATTGTCAGTACACACTATTCAATTGAATGACATATATCGGGATGTTGTTCTCCCAAGCCCAGTGTCTCTGAACTTGGTCCAGTGTGTGGTCTGTCCACAGTGGAAAAACCCCATAGATGAATGTCCCTCAGAGGCTTATTCATCCCCGGGGCTCTAAATAAGCATTCTGTTTGATGGGCCGCCTTTAGGATGACAGTATCCCATATTCAAAGGGAGGAATATATAATCTGTTGAATTTGTACCCTTCGTCTCATCTGCTTCTTTCTTTGAGAGATGTATGGTCAATGTAGTACAATGAGATTACAGACAGAATGCTTTCTTCCTTTTCAACATATCATAAAAAGAAAGAGTGCACAGTTGTACATGCCAATCATACAGAGTCCCAAGCATATAACACAACACTTTTGTTCTATAAAACTGCTAGTTCAGAACTATACAATTCAGGTACATTAACATCATATCTATGCAAAGAATAATGATACGTATGAGCTGATGTATACAGGAATGAAAAAGTATTTTGTAAAGCAAGATAACAGAGAGGCAGGCAAAAAAAGTAATAGCTTTTACTCACCAAGTGTTATTACACTGGCACAATGCACACAAGCAgatacatacacgcacacacacaaacatacgagcacacacacacacacacacatacgcacagacacacgctcgcacgcaaacacacacaattTAGAAATAGAGAGTTTGCCAACAGCCTAAAATGTGTTATCCACTAACCTAAAATGTTGCAGTGTTAGCTGATGTTATAGCCAGACAATATTCTTTAAATATTTAAATTTGGTTAATAATCAGCTAAATCCACTTGATATATTTTACAATGCAGATGAAAATAGATTTCCTTCAGGTTTTCACTCCAGTTTACTACCGCTTCCCTGACCATCCCACATAACTTTGCTGCATTAGCAAACAAGATTAATTGCCAATAAAAAATGCAAATCCACTGCAAATCCAAATTGACCGCTAAAGCTGTTGAGTAGGGCAAAGCAAGTAGAAAACATGAACTTTTTAAAAGGTACAGTAACATTTCCAACATGGTAGTTTATCTCAGACGTACATTCAATTAGTACTAGGTTTTAAACGCAGTTAACTTTTCATGTCATGGAGTCAAACAGGAGTTATCCTCATGGTGTTGAGTATTACAAAACAAAAGTCCTTCAGAGTAAAACCTAACTTATTTCTATACCGTTCCTATTCCCCCAGGGTCTCTGCttgatatgtacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaga
>TU202594
GAAAGTAAATACAGATTCAGCATCAGTCATCAccattttattgattatttataaATGTAGCAAAACATActtcatacagacagacacatagtgAAAGTGAAAAGAATTTGAACCAATGTTGAAAACTCAGTCCAATAAGACCGGAACACGGCCTTATGGCTTTCTGTACAAAAGATACGCTTCTACTGAAGATTGTCAGTACACACTATTCAATTGAATGACATATATCGGGATGTTGTTCTCCCAAGCCCAGTGTCTCTGAACTTGGTCCAGTGTGTGGTCTGTCCACAGTGGAAAAACCCCATAGATGAATGTCCCTCAGAGGCTTATTCATCCCCGGGGCTCTAAATAAGCATTCTGTTTGATGGGCCGCCTTTAGGATGACAGTATCCCATATTCAAAGGGAGGAATATATAATCTGTTGAATTTGTACCCTTCGTCTCATCTGCTTCTTTCTTTGAGAGATGTATGGTCAATGTAGTACAATGAGATTACAGACAGAATGCTTTCTTCCTTTTCAACATATCATAAAAAGAAAGAGTGCACAGTTGTACATGCCAATCATACAGAGTCCCAAGCATATAACACAACACTTTTGTTCTATAAAACTGCTAGTTCAGAACTATACAATTCAGGTACATTAACATCATATCTATGCAAAGAATAATGATACGTATGAGCTGATGTATACAGGAATGAAAAAGTATTTTGTAAAGCAAGATAACAGAGAGGCAGGCAAAAAAAGTAATAGCTTTTACTCACCAAGTGTTATTACACTGGCACAATGCACACAAGCAgatacatacacgcacacacacaaacatacgagcacacacacacacacacacatacgcacagacacacgctcgcacgcaaacacacacaattTAGAAATAGAGAGTTTGCCAACAGCCTAAAATGTGTTATCCACTAACCTAAAATGTTGCAGTGTTAGCTGATGTTATAGCCAGACAATATTCTTTAAATATTTAAATTTGGTTAATAATCAGCTAAATCCACTTGATATATTTTACAATGCAGATGAAAATAGATTTCCTTCAGGTTTTCACTCCAGTTTACTACCGCTTCCCTGACCATCCCACATAACTTTGCTGCATTAGCAAACAAGATTAATTGCCAATAAAAAATGCAAATCCACTGCAAATCCAAATTGACCGCTAAAGCTGTTGAGTAGGGCAAAGCAAGTAGAAAACATGAACTTTTTAAAAGGTACAGTAACATTTCCAACATGGTAGTTTATCTCAGACGTACATTCAATTAGTACTAGGTTTTAAACGCAGTTAACTTTTCATGTCATGGAGTCAAACAGGAGTTATCCTCATGGTGTTGAGTATTACAAAACAAAAGTCCTTCAGAGTAAAACCTAACTTATTTCTATACCGTTCCTATTCCCCCAGGGTCTCTGCttgatatgtacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaga
>TU202591
TGGCTTTCTGTACAAAAGATACGCTTCTACTGAAGATTGTCAGTACACACTATTCAATTGAATGACATATATCGGGATGTTGTTCTCCCAAGCCCAGTGTCTCTGAACTTGGTCCAGTGTGTGGTCTGTCCACAGTGGAAAAACCCCATAGATGAATGTCCCTCAGAGGCTTATTCATCCCCGGGGCTCTAAATAAGCATTCTGTTTGATGGGCCGCCTTTAGGATGACAGTATCCCATATTCAAAGGGAGGAATATATAATCTGTTGAATTTGTACCCTTCGTCTCATCTGCTTCTTTCTTTGAGAGATGTATGGTCAATGTAGTACAATGAGATTACAGACAGAATGCTTTCTTCCTTTTCAACATATCATAAAAAGAAAGAGTGCACAGTTGTACATGCCAATCATACAGAGTCCCAAGCATATAACACAACACTTTTGTTCTATAAAACTGCTAGTTCAGAACTATACAATTCAGGTACATTAACATCATATCTATGCAAAGAATAATGATACGTATGAGCTGATGTATACAGGAATGAAAAAGTATTTTGTAAAGCAAGATAACAGAGAGGCAGGCAAAAAAAGTAATAGCTTTTACTCACCAAGTGTTATTACACTGGCACAATGCACACAAGCAgatacatacacgcacacacacaaacatacgagcacacacacacacacacacatacgcacagacacacgctcgcacgcaaacacacacaattTAGAAATAGAGAGTTTGCCAACAGCCTAAAATGTGTTATCCACTAACCTAAAATGTTGCAGTGTTAGCTGATGTTATAGCCAGACAATATTCTTTAAATATTTAAATTTGGTTAATAATCAGCTAAATCCACTTGATATATTTTACAATGCAGATGAAAATAGATTTCCTTCAGGTTTTCACTCCAGTTTACTACCGCTTCCCTGACCATCCCACATAACTTTGCTGCATTAGCAAACAAGATTAATTGCCAATAAAAAATGCAAATCCACTGCAAATCCAAATTGACCGCTAAAGCTGTTGAGTAGGGCAAAGCAAGTAGAAAACATGAACTTTTTAAAAGGTACAGTAACATTTCCAACATGGTAGTTTATCTCAGACGTACATTCAATTAGTACTAGGTTTTAAACGCAGTTAACTTTTCATGTCATGGAGTCAAACAGGAGTTATCCTCATGGTGTTGAGTATTACAAAACAAAAGTCCTTCAGAGTAAAACCTAACTTATTTCTATACCGTTCCTATTCCCCCAGGGTCTCTGCttgatatgtacatacagtgccttgcgaaagtattcggcccccttga
>TU202592
GAAAGTAAATACAGATTCAGCATCAGTCATCAccattttattgattatttataaATGTAGCAAAACATActtcatacagacagacacatagtgAAAGTGAAAAGAATTTGAACCAATGTTGAAAACTCAGTCCAATAAGACCGGAACACGGCCTTATGGCTTTCTGTACAAAAGATACGCTTCTACTGAAGATTGTCAGTACACACTATTCAATTGAATGACATATATCGGGATGTTGTTCTCCCAAGCCCAGTGTCTCTGAACTTGGTCCAGTGTGTGGTCTGTCCACAGTGGAAAAACCCCATAGATGAATGTCCCTCAGAGGCTTATTCATCCCCGGGGCTCTAAATAAGCATTCTGTTTGATGGGCCGCCTTTAGGATGACAGTATCCCATATTCAAAGGGAGGAATATATAATCTGTTGAATTTGTACCCTTCGTCTCATCTGCTTCTTTCTTTGAGAGATGTATGGTCAATGTAGTACAATGAGATTACAGACAGAATGCTTTCTTCCTTTTCAACATATCATAAAAAGAAAGAGTGCACAGTTGTACATGCCAATCATACAGAGTCCCAAGCATATAACACAACACTTTTGTTCTATAAAACTGCTAGTTCAGAACTATACAATTCAGGTACATTAACATCATATCTATGCAAAGAATAATGATACGTATGAGCTGATGTATACAGGAATGAAAAAGTATTTTGTAAAGCAAGATAACAGAGAGGCAGGCAAAAAAAGTAATAGCTTTTACTCACCAAGTGTTATTACACTGGCACAATGCACACAAGCAgatacatacacgcacacacacaaacatacgagcacacacacacacacacacatacgcacagacacacgctcgcacgcaaacacacacaattTAGAAATAGAGAGTTTGCCAACAGCCTAAAATGTGTTATCCACTAACCTAAAATGTTGCAGTGTTAGCTGATGTTATAGCCAGACAATATTCTTTAAATATTTAAATTTGGTTAATAATCAGCTAAATCCACTTGATATATTTTACAATGCAGATGAAAATAGATTTCCTTCAGGTTTTCACTCCAGTTTACTACCGCTTCCCTGACCATCCCACATAACTTTGCTGCATTAGCAAACAAGATTAATTGCCAATAAAAAATGCAAATCCACTGCAAATCCAAATTGACCGCTAAAGCTGTTGAGTAGGGCAAAGCAAGTAGAAAACATGAACTTTTTAAAAGGTACAGTAACATTTCCAACATGGTAGTTTATCTCAGACGTACATTCAATTAGTACTAGGTTTTAAACGCAGTTAACTTTTCATGTCATGGAGTCAAACAGGAGTTATCCTCATGGTGTTGAGTATTACAAAACAAAAGTCCTTCAGAGTAAAACCTAACTTATTTCTATACCGTTCCTATTCCCCCAGGGTCTCTGCttgatatgtacatacagtgccttgcgaaagtattcggcccccttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202593 False 1360 lncRNA 0.38 1 70325835 70327194
TU202594 False 1516 lncRNA 0.38 1 70325835 70327350
TU202591 False 1317 lncRNA 0.39 1 70325878 70327194
TU202592 True 1473 lncRNA 0.38 1 70325878 70327350

Neighbor

gene id symbol gene type direction distance location
LOC110495034 LOC106560827 coding downstream 115523 70182496 ~ 70210312 (-)
LOC118937291 NA coding downstream 149192 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 210735 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 214130 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 250210 69995090 ~ 70075625 (-)
LOC110495228 LOC106560819 coding upstream 75288 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 213204 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 224913 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 385839 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 406827 70734177 ~ 70741635 (-)
G178306 NA non-coding downstream 41926 70283601 ~ 70283909 (-)
G178301 NA non-coding downstream 49322 70275646 ~ 70276513 (-)
G178227 NA non-coding downstream 51546 70180371 ~ 70274289 (-)
G178088 NA non-coding downstream 202726 70122854 ~ 70123109 (-)
G178349 NA non-coding upstream 26288 70353638 ~ 70354068 (-)
G178356 NA non-coding upstream 40129 70367479 ~ 70369087 (-)
G178476 NA non-coding upstream 43765 70371115 ~ 70371376 (-)
G178482 NA non-coding upstream 57424 70384774 ~ 70385114 (-)
G178483 NA non-coding upstream 57787 70385137 ~ 70385803 (-)
LOC110494902 LOC106560839 other downstream 621436 69648833 ~ 69767366 (-)
G177487 NA other downstream 734113 69591135 ~ 69591722 (-)
G174505 NA other downstream 3632985 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3935069 66375226 ~ 66390766 (-)
G173675 NA other downstream 3987449 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 441808 70769140 ~ 70773282 (-)
G179215 NA other upstream 578022 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 599340 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 670695 70998045 ~ 71070204 (-)

Expression


Co-expression Network