G178349


Basic Information

Item Value
gene id G178349
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70353638 ~ 70354068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU202609
TACGACAGCGGGAGTTACAAGGCAGAAGTCCACAACTTGCCAAAGCCAACCTCCTCCTCACCCCACTCTCAGCTGTTGTCTCAGTTTTTTTTTGGTTCGGATTTTTCAAAGTTGAATCCAGATGATAAAACGGCATACTGCTCCCTTATGGCCCTGATAACGTTTCAAGTAAATTGCAACAAGTTGATGGCTTCATTTTGCGCGTAAAGCAACAACACCGTGGCAAAAAAAAGCAGATAGAAGCGCTCGGTCGTTCGCTTCATAAAACGGTGTTCTTGAGTGGGACCACCTTTTTCCTGCAAACTTCTTTGTTGGAACGACCTCCTCGTCGGCTTGTTTCTACCCCAGAAAATCATCGAGGACGTCGTGAGGTCACTTCCTGGATCCGAA
>TU202610
CTTATATCAAAGTTAGCTAATTAGCAAGTTAGCTAGCAACATACGACAGCGGGAGTTACAAGGCAGAAGTCCACAACTTGCCAAAGCCAACCTCCTCCTCACCCCACTCTCAGCTGTTGTCTCAGTTTTTTTTTGGTTCGGATTTTTCAAAGTTGAATCCAGATGATAAAACGGCATACTGCTCCCTTATGGCCCTGATAACGTTTCAAGTAAATTGCAACAAGTTGATGGCTTCATTTTGCGCGTAAAGCAACAACACCGTGGCAAAAAAAAGCAGATAGAAGCGCTCGGTCGTTCGCTTCATAAAACGGTGTTCTTGAGTGGGACCACCTTTTTCCTGCAAACTTCTTTGTTGGAACGACCTCCTCGTCGGCTTGTTTCTACCCCAGAAAATCATCGAGGACGTCGTGAGGTCACTTCCTGGATCCGAA
>TU202608
TACGACAGCGGGAGTTACAAGGCAGAAGTCCACAACTTGCCAAAGCCAACCTCCTCCTCACCCCACTCTCAGCTGTTGTCTCAGTTTTTTTTTGGTTCGGATTTTTCAAAGTTGAATCCAGATGATAAAACGGCATACTGCTCCCTTATGGCCCTGATAACGTTTCAAGTAAATTGCAACAAGTTGATGGCTTCATTTTGCGCGTAAAGCAACAACACCGTGGCAAAAAAAAGCAGATAGAAGCGCTCGGTCGTTCGCTTCATAAAACGGTGTTCTTGAGTGGGACCACCTTTTTCC
>TU202611
CTTATATCAAAGTTAGCTAATTAGCAAGTTAGCTAGCAACATACGACAGCGGGAGTTACAAGGCAGAAGTCCACAACTTGCCAAAGCCAACCTCCTCCTCACCCCACTCTCAGCTGTTGTCTCAGTTTTTTTTTGGTTCGGATTTTTCAAAGTTGAATCCAGATGATAAAACGGCATACTGCTCCCTTATGGCCCTGATAACGTTTCAAGTAAATTGCAACAAGTTGATGGCTTCATTTTGCGCGTAAAGCAACAACACCGTGGCAAAAAAAAGCAGATAGAAGCGCTCGGTCGTTCGCTTCATAAAACGGTGTTCTTGAGTGGGACCACCTTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202609 False 390 lncRNA 0.47 1 70353638 70354027
TU202610 False 431 lncRNA 0.45 1 70353638 70354068
TU202608 False 297 lncRNA 0.45 1 70353731 70354027
TU202611 True 338 lncRNA 0.44 1 70353731 70354068

Neighbor

gene id symbol gene type direction distance location
LOC110495034 LOC106560827 coding downstream 143326 70182496 ~ 70210312 (-)
LOC118937291 NA coding downstream 176995 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 238538 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 241933 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 278013 69995090 ~ 70075625 (-)
LOC110495228 LOC106560819 coding upstream 48570 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 186486 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 198195 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 359121 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 380109 70734177 ~ 70741635 (-)
G178335 NA non-coding downstream 26288 70325835 ~ 70327350 (-)
G178306 NA non-coding downstream 69729 70283601 ~ 70283909 (-)
G178301 NA non-coding downstream 77125 70275646 ~ 70276513 (-)
G178227 NA non-coding downstream 79349 70180371 ~ 70274289 (-)
G178356 NA non-coding upstream 13411 70367479 ~ 70369087 (-)
G178476 NA non-coding upstream 17047 70371115 ~ 70371376 (-)
G178482 NA non-coding upstream 30706 70384774 ~ 70385114 (-)
G178483 NA non-coding upstream 31069 70385137 ~ 70385803 (-)
G178484 NA non-coding upstream 31966 70386034 ~ 70388902 (-)
LOC110494902 LOC106560839 other downstream 649239 69648833 ~ 69767366 (-)
G177487 NA other downstream 761916 69591135 ~ 69591722 (-)
G174505 NA other downstream 3660788 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3962872 66375226 ~ 66390766 (-)
G173675 NA other downstream 4015252 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 415090 70769140 ~ 70773282 (-)
G179215 NA other upstream 551304 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 572622 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 643977 70998045 ~ 71070204 (-)

Expression


Co-expression Network