G178484


Basic Information

Item Value
gene id G178484
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70386034 ~ 70388902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU202752
agacagtgtggtgaagaaggcgcaacagtgcacaaacctttacagatgcaatTTCCAGTTTtcataacacctttatttaactatgtaaCCAGTCTCAAATtcacagagctatggatgcaagcactgaccatccatgatatcaaatgtATAATTTTAACCATGTCTTCAGGCTATACAGTATACATTTAGGTTGTTTAAAAACATTGACGTAACAcgtgaggcatttataagtggGTATATATATCACAAGGACTTAATTAACATGgtcatcactaaggacttaacatgaTCCACACACCCTTGAAGAGTGCACcgcttggtatggcaactgcactgctCATGACTGCAAAGCGATACTGAGGGTGGTAAGGAGAGCGGATGGCCTAGTACATCAAAAGGGCCAAGGTCCCTGCCAACCAGAGGGGTATGTTACGAttgaagctagatctactcaagCTTTTATACATTTTGCAAGCTTCAGTTAACTTCACGTTCAAGCTTCATCAATACTACGAAGGTGGATATTGATAATGCGGCTGCCGCTAACTCAAGCAAGGTTAAACTGCAGCACTTCTAATAGCCTTTTTCACACCATAGTCTGCTGAATTTGAAAGATAATTTTGGCAATAATGAAAATGTGGCACTGCCTTGCCCCTGTGTTGGTgtcagcattgtctcaatgaagagtttgtCGTTCAACATGCACGCACAGTTACAAGCTTGCTGGAGTTAGCGGCAATCGTACTAGCAATACCCTCGTCATAGAACAgctgaagcctgagctggaatgggTAGATACTTGATGCCGACTAGCTTTAGAAAACCCGGAGTATATCTAGCTTCAATCATAGAATACCCTTCAGGTCTGTGGTGGTGAAGCCTGTAGGTATGAATTTGCTGACTGTCATATTCGGAGATGTCAGCAGGGGAAATCGTTGGCTACTTTTCCTGGCTGCTGGGAACTTTCCAAGGGAAAAGAGGGCATGTGATTTCACGCCAcaagatttttttaaatccattcaACCACAGATCACAGGGTCAGTTCCCATGTTCTCCAGGTAATTAGCATCCATTGTGGGCTGTCATCCGAGAGGGACCAGTGACATTTTCACAGGCTATTCTCCCCCATTAAAAGTGGATCAAGCTGGGGATTTAGCAGAACCGCCTGGCCCCCATCACCTTTAATGGAATTAGTCTACTTCACAACCAAGGACGCGACTGAATGGGCGACAAGGCAACTGATCCTCAGACAGCTCTGATGGAATTTGAGACAGAATAGTGGGATGGGGAGTTTTAGCATCTCTGGTATGGGATTACACTACCGAGGTTATTCTGATATGTGAACCACTTATAAAAATGCAGTTCTGTAGAAAATCCCAACAGGTGCATTCACTCTTTTCATATATATGACACTGTGTGGGACACAGAGTTTTAAACACCAAAGTACATGAATGCAAGAGATGTCCTTAGAAAACTGTTTGACCATGACTTACTTTGAGGTAAAATATTTGATCATTGATCAAGAATGTAGCCACTTAGGATGACAGCTATTTTACCAAGAGGTATTATAAACCACTCACTCATGCTGACAGAACATGACAAGGCCATTCATCTCGTTTTAGCTGAAGATTACATTTCAGATGCTGTTAAAACTGATCTTCAGTTGCCACAAATATGTTGATAGCACACTTAAACCACTTTCAGGCCTCAAGTGGTTTATTGTGAAGATGGGTCCATGTCCATAGTCATCTCTTGTGTAGATCCATCGAGGCACCCAGCTACATGGCTCAATGCCAAATGAATGGGAAAGATAAACAATATAATTTCATCAATTCAGATGCTGCCTATCATTCacatgccatttgggatggggcAGTATATAGATGAGGCGTGAGTCATCTTCGACATTCGAACACTTAAACTTCGGGTAAATTTAGATTGTCTTGCATGTCGTAGCTTTCCTCAACATACTTTAACACAGATTTCCCAACTGTTAATTTTCTGAATGCCAAACATTACAAAGATAAACAAGGGAACCAAGGCTTACACTTCATAATGAATTTGAAAAGTTTGCCAATGCTACTCCATTAACAGTTAAATCATGATGGGTATTAGAATGCCTCACCAGAGCTCATTAtacaaaatataaaaacaaacaaGACAACCAATTAAGCAACACGTAATCGCCGTAACATGAAGTACTAAATAAGGATATCAGTACATCAATTGTCCAATTAATCTGACTTTAAAAGAACACAGGGAAGATGAGGCCAATCGGGGGACGATGCAGATTCAATAAATACAAAAAGTGGACAGACATTTCAAACAAACTCCATTTGATCAGTGGAAAGAAAAGCCCCTTTGAAGAGTGGAGGCAAGATCCTGTGGAAAACATTGACTGGGTTTGTAGGCTGCATATTTCAAAGTCAAACAACCTGCCTATGAATCTTCTCCAACAGCCCCAACTCAAAGGCAGAAGCACACACGGTCTCAACATCTCAGCATAGTCTTACAGAGTTCAGGGCCTTGTGTACTTTGGCTTAATAGTCTGTGGTGGTTGGGAAGGCAGCCCCACACTGTGGGGTTCTTGCCTGTTGGTGccagttgttgttgctgctgctgaaaGTAAGTTGGACGTTTGACTCTGGGTTTCCGTCATTTGGGCTTGCTTTTGGATTTGGTGAGCTGCACCACAAAGAAGGACAGCACAACCATGGCTCCCAGGAAGGCAAACATGGGGATGGTCTGgcccacttcctggt

Function

NR:

description
PREDICTED: membrane-bound transcription factor site-1 protease

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202752 True 2762 lncRNA 0.38 2 70386034 70388902

Neighbor

gene id symbol gene type direction distance location
LOC110495034 LOC106560827 coding downstream 175722 70182496 ~ 70210312 (-)
LOC118937291 NA coding downstream 209391 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 270934 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 274329 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 310409 69995090 ~ 70075625 (-)
LOC110495228 LOC106560819 coding upstream 13736 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 151652 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 163361 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 324287 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 345275 70734177 ~ 70741635 (-)
G178483 NA non-coding downstream 231 70385137 ~ 70385803 (-)
G178482 NA non-coding downstream 920 70384774 ~ 70385114 (-)
G178476 NA non-coding downstream 14658 70371115 ~ 70371376 (-)
G178356 NA non-coding downstream 16947 70367479 ~ 70369087 (-)
G178349 NA non-coding downstream 31966 70353638 ~ 70354068 (-)
G178485 NA non-coding upstream 371 70389273 ~ 70389585 (-)
G179139 NA non-coding upstream 296014 70684916 ~ 70685225 (-)
G179134 NA non-coding upstream 300351 70689253 ~ 70690634 (-)
G179141 NA non-coding upstream 302688 70691590 ~ 70691865 (-)
G179178 NA non-coding upstream 389534 70778436 ~ 70778692 (-)
LOC110494902 LOC106560839 other downstream 681635 69648833 ~ 69767366 (-)
G177487 NA other downstream 794312 69591135 ~ 69591722 (-)
G174505 NA other downstream 3693184 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3995268 66375226 ~ 66390766 (-)
G173675 NA other downstream 4047648 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 380256 70769140 ~ 70773282 (-)
G179215 NA other upstream 516470 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 537788 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 609143 70998045 ~ 71070204 (-)

Expression


Co-expression Network