XLOC_002131


Basic Information

Item Value
gene id XLOC_002131
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23588675 ~ 23591058 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005893
tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCACCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacacgcttttttttctgtttcttcgCCTGATGGCCGACTTGTTGCTCCGCCTCACGCAGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGACCACTTTATAATCACAACACCTAGGATAATTTAGgagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgtTACTGTGATCTTTCTGGGGTGTTAACTGTAAAGCAGTAAGTAGTATTTTTACTCTTGTATTTCTTAAGTTTGTTCATGGATTTTTGTGACAATACATTGATGCATAAGTGTTGAATTCAGcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGATATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccatttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataaaaaatcttTAGTTGACTAATGGTTATTCAATTATTAGGGGGCAGCCCTAGTAATCATTAGCCACTTCAACACTTTAAACTGAGAGATTAAACTCTAATGCCAATTTGTTTTTGtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005893 True 2384 lncRNA 0.39 1 23588675 23591058

Neighbor

gene id symbol gene type direction distance location
XLOC_002130 CR847844.2 coding upstream 29131 23553533 ~ 23559544 (+)
XLOC_002129 zmp:0000001103 coding upstream 37719 23548674 ~ 23550956 (+)
XLOC_002128 NA coding upstream 44609 23542617 ~ 23544066 (+)
XLOC_002127 CR847844.1 coding upstream 46787 23537576 ~ 23541888 (+)
XLOC_002126 zmp:0000000937 coding upstream 65360 23520952 ~ 23523315 (+)
XLOC_002132 NA coding downstream 392249 23983307 ~ 23992917 (+)
XLOC_002133 gbe1a coding downstream 457605 24048663 ~ 24298042 (+)
XLOC_002134 NA coding downstream 505181 24096239 ~ 24096470 (+)
XLOC_002135 NA coding downstream 505997 24097055 ~ 24097310 (+)
XLOC_002136 NA coding downstream 725795 24316853 ~ 24375160 (+)
XLOC_002122 CT827808.1 non-coding upstream 170728 23417833 ~ 23417947 (+)
XLOC_002119 NA non-coding upstream 549385 23034329 ~ 23039290 (+)
XLOC_002117 NA non-coding upstream 623249 22960289 ~ 22965426 (+)
XLOC_002116 FP102052.2 non-coding upstream 632305 22938231 ~ 22956370 (+)
XLOC_002137 CU467963.3 non-coding downstream 762692 24353750 ~ 24353866 (+)

Expression


Co-expression Network