G179216


Basic Information

Item Value
gene id G179216
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70903945 ~ 70905255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU203551
tatgcatagtcactttacaaatgacctcgactaacctgtaccccctcacattgactcggtacctcctgtatatatcctccttattgttatgtcattttcttgtaTTACTTTTTGATTCGATTTTTTCAAACTTGAGTTAATTTAGCAATTATTTTCTTAACTATATTTTTtgaactgcattattggttaagggcttgtaagtaagcattttcacggtaaggttgtattcgggacaaataaaatttgatttgacatgtagTTGATACAGAACTTTTTAAGCATGGGACCAGATATAATTAGAGCCACCCTAGCGCCATCCCATCTCCACACCAACCGGGTTtgggtgtggtgtgttttgttaATAATGTTATAACCTTATACAGAGTAATGAGAAAAAGTGAGACGTACTTTTCTTTTCATACACACTTAAAAAGAGTGAGGTAGATATATACTTGAAGGGAAGGGGGGAAAAAGTCCCCCAGCCATGACACCAAAGAAAGTACATATCAAAAATCAAACTTTATAATGAATGAAGGGGCATTTATACAGTGATTTAAACTGATATCacaaaaggaaaataaaaaaataaataacaatcctACAGAGAATAACTTCAAAGCTGGAAACTTTTTCAAAAGATGAGGAGAAATCCTTCAAAAACACTTTTCATACTGACACCCCCAGTAAGACCTATTCAATTCATGACATTGAAATGTGACCACTTCCCTGGACTTTAACCCATCCTTATTTGGTGTACAGGCGCCATGTTTAAGGAGACAAACAATagaaactgttttcactttgatcGTAAGAGAATGAGTATGACAACACAAATTAAATGAATGATAAAGGAGAATAAGCAGTAATGCTGCACTTGAAATCTAAGACACAAAAAGAGAACTTTGATTATGGATGAGCATTATTTGAGAGGATGGCGAGTGGTTGGGATCATTAAGGCAAACAAGACAACCCAATTAGCCCTATCAATTGAGAGGCAGGAAAAAGAATGGGTTAAAACACCAGATCCAGTAGAAAAAAGAAGATCCTGTGCAACTAATCCTGACTTCAAAAGGAGGCACTGGGGGAGGCAGGTGTACTGCACATTTCAGTGTGgggctggaggggaggggagagggcacTATTGGACTCAACAGAGAGGTGAAACAAGCAGAGGACAGTAATGAGAATGTATGGAGAAAGCAAAACATGTACTTCGACCTGAGATTAAGTTGCACCTAGGGGGCAATAACTAGGTACTAGACAACGGGTACAAAAAGGGTGCCAAACTTACACACTCGCACACGGAGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203551 True 1311 lncRNA 0.38 1 70903945 70905255

Neighbor

gene id symbol gene type direction distance location
LOC118941475 NA coding downstream 127964 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 130663 70769140 ~ 70773282 (-)
arpin arpin coding downstream 135936 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 162310 70734177 ~ 70741635 (-)
chka LOC106560813 coding downstream 170065 70713189 ~ 70733880 (-)
ttc23 ttc23 coding upstream 21377 70926632 ~ 70945359 (-)
LOC118941478 NA coding upstream 199051 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 229010 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 516754 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 1107003 72012258 ~ 72050185 (-)
G179252 NA non-coding downstream 28776 70874750 ~ 70875169 (-)
G179249 NA non-coding downstream 32943 70870800 ~ 70871002 (-)
G179240 NA non-coding downstream 45437 70858300 ~ 70858508 (-)
G179236 NA non-coding downstream 53978 70849586 ~ 70849967 (-)
G179235 NA non-coding downstream 55109 70848631 ~ 70848836 (-)
G179305 NA non-coding upstream 81843 70987098 ~ 70987358 (-)
G179310 mef2a non-coding upstream 95378 70998045 ~ 71070204 (-)
G179320 NA non-coding upstream 101434 71006689 ~ 71007918 (-)
G179311 mef2a non-coding upstream 174258 71079513 ~ 71093345 (-)
G179372 NA non-coding upstream 195264 71100519 ~ 71100755 (-)
LOC110501848 NA other downstream 343090 70552263 ~ 70642587 (-)
LOC110494902 LOC106560839 other downstream 1199546 69648833 ~ 69767366 (-)
G177487 NA other downstream 1312223 69591135 ~ 69591722 (-)
G174505 NA other downstream 4211095 66692408 ~ 66692850 (-)
G179215 NA other upstream 117 70905372 ~ 70906254 (-)
G179754 NA other upstream 569117 71474372 ~ 71474979 (-)

Expression


Co-expression Network