G179310 (mef2a)


Basic Information

Item Value
gene id G179310
gene name mef2a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70998045 ~ 71070204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU203653
AATTCACTCCAGAGAAAAGTGCTACTACCTCAAATAGAAATGGTTGCTATATGAAAACATACAATCCTGTGAAGTCAGTGGGCACTTTGAGTCCCTGTCaagaattcaccacaggtggtaAGCGGTGAGAAGACAACTCCTGTTTTCAACTCCAAGCGGAACAACACTGTAGGCCTCAGGTAGACAAGTGGGAGTAGCCTGCTGCCATTGGcttgtgtgtggagagagaggcatCTTTATGCTGAGTGGAGGGCATGGGAGAGGGGTGACACTGACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGTCCCATCTCTGCGTTCTGTTCGGTCTCTCTGACACTTCAAGAATATCAGAAAAACTACCGAGCTCGTCTTCTTCCTTATCTCCTAGCACATTGTAcaacactctctcttctctctctctctggctctgtcgtTTTCGTGACCACACCACaatCCAACTATCAAAGCAGTGATAACCTCTTTATCGGACCAAGAATATCcagctcctgtctgtctgtctgtctcttcttttAGCCTTCAATGCTTCCCTCACTCGCGTTAAGCTTCCTGCAGATTTCTCCTCCTTGGGAAAAATGtcCTTGTCTCTCAAGTCCCTCGCTGAATATAGATACTCTATATCAGAGCCTCCAATGGATACCGTGTGCGTGGAACATTAACGTAATTTCAGTCACATTTACACACAACTGCTATTTTAGGGAGCAGCCAAACTCAGTAGAGCCAGTTTCTTGTCAGTGAGACTCCTCCCCTTATCTGACGAACACCAGACGAGTTAGAAATCAACCTCCTCCCGCTCATGTCTAACGTTACAAAAACTATACCCAAACTTGTTTAACTTTCATCGTAGGCTACCTATATACCTCGATAAATGTGACTTTTACAGTGAAATAGAATGTCAAAATGACAGTGCGCGAAGGCATGATATTAGGCTATCTGATGACATGATTAGTAAGATGTGCTCTATGTTACTCAAGTAGGCCGAGCCTATGTATGCTATTTAC
>TU203651
TGCCTTGACTAGGGGGCCTCTGCTGGCCCCCGCTGGAGCCCACATTCCTGTGTAAGGAGGCCTGAGCGGGAGAGAGCATCCCACTGTCGCTCAGAGAGGCTACGGCCTGGGCCTGGCTGCTCATGGAGCCTCCTGGGTTGTAGGACATGGTGTTCTGGTTGGAGACTGGCACTGCCACATGCATGGAGAAGTTCTGCTGGGGCAGCGCTGTGGGACCACAGCGCTTGTACATTAAATCACTCTCTTCGCTTAGTTTGCCGAAACGGTCGTCCATGAGGGGGCTGTGCCCAAAACAGTCATCTGGATCAGGACTGGCACACAGGTCATTATGGCCTTTGTTTCTTAATTTCTCGACAATGTCAGAGTTAGTTCTGCTCTCGTGGGGCTCGTTGTACTCAGTGTATTTGAGCAGGACCTTGTCCATGTCTGTGCTCGCATACTGAAACAGTTTGTTTGAGCTGTTGAATATGATCAGGGCTATCTCACAGTCACATAGAACGCTGAGCTCATAGGCCTTCTTCATTAGCCCAAACTTCCTCTTCGTGAAGGTAACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGTCCCATCTCTGCGTTCTGTTCGGTCTCTCTGACACTTCAAGAATATCAGAAAAACTACCGAGCTCGTCTTCTTCCTTATCTCCTAGCACATTGTAcaacactctctcttctctctctctctggctctgtcgtTTTCGTGACCACACCACaatCCAACTATCAAAGCAGTGATAACCTCTTTATCGGACCAAGAATATCcagctcctgtctgtctgtctgtctcttcttttAGCCTTCAATGCTTCCCTCACTCGCGTTAAGCTTCCTGCAGATTTCTCCTCCTTGGGAAAAATGtcctgggagggggagaggagagaaagtgtTTTGCTCAGTGATTCAGAGGCATGGTGTCAACGGCAGCATTCTTTTTCTGACAACCAGCATTAATTGCAGATCAGACTCGCCCACACACTCCACATTTCTCCTGTGTCTCCTGGAAGGAGCTGAGATCAGACTGTGATATTCTGGTGCTATGACGAGGAGGGTTGTGGGAGACCCTCCAGGCCCACACTTATCGCACCAATCACCACCTCAGAACTTATCCCTTTTACCTGGGTCAACTTTCTCCACTCAAACCAAAGGCTGTATTTACACATCTATCAATTTATAAAGAGACATTTAGGCCTATACACACCCAGGATGTAATGTGGTAAAAGTTTAATTTATTTGACCTGGTAAAGGTCAAATTCATTTGATACCTTGTTCTACTGCACCCTGACATAACACTAGAGCGTAAAAATGCAGCTCATGTTGCAGTAGAC
>TU203649
TGCCTTGACTAGGGGGCCTCTGCTGGCCCCCGCTGGAGCCCACATTCCTGTGTAAGGAGGCCTGAGCGGGAGAGAGCATCCCACTGTCGCTCAGAGAGGCTACGGCCTGGGCCTGGCTGCTCATGGAGCCTCCTGGGTTGTAGGACATGGTGTTCTGGTTGGAGACTGGCACTGCCACATGCATGGAGAAGTTCTGCTGGGGCAGCGCTGTGGGACCACAGCGCTTGTACATTAAATCACTCTCTTCGCTTAGTTTGCCGAAACGGTCGTCCATGAGGGGGCTGTGCCCAAAACAGTCATCTGGATCAGGACTGGCACACAGGTCATTATGGCCTTTGTTTCTTAATTTCTCGACAATGTCAGAGTTAGTTCTGCTCTCGTGGGGCTCGTTGTACTCAGTGTATTTGAGCAGGACCTTGTCCATGTCTGTGCTCGCATACTGAAACAGTTTGTTTGAGCTGTTGAATATGATCAGGGCTATCTCACAGTCACATAGAACGCTGAGCTCATAGGCCTTCTTCATTAGCCCAAACTTCCTCTTCGTGAAGGTAACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGTCCCATCTCTGCGTTCTGTTCGGTCTCTCTGACACTTCAAGAATATCAGAAAAACTACCGAGCTCGTCTTCTTCCTTATCTCCTAGCACATTGTAcaacactctctcttctctctctctctggctctgtcgtTTTCGTGACCACACCACaatctgc

Function

symbol description
mef2a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy.

NR:

description
myocyte-specific enhancer factor 2A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203653 False 1041 TUCP 0.45 3 70998045 71035214
TU203651 False 1362 lncRNA 0.49 5 71000633 71070204
TU203649 True 757 TUCP 0.40 4 71034735 71070204

Neighbor

gene id symbol gene type direction distance location
ttc23 ttc23 coding downstream 55274 70926632 ~ 70945359 (-)
LOC118941475 NA coding downstream 224652 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 227351 70769140 ~ 70773282 (-)
arpin arpin coding downstream 232624 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 258998 70734177 ~ 70741635 (-)
LOC118941478 NA coding upstream 34102 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 64061 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 351805 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 942054 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 1000277 72070481 ~ 72090783 (-)
G179305 NA non-coding downstream 13275 70987098 ~ 70987358 (-)
G179216 NA non-coding downstream 95378 70903945 ~ 70905255 (-)
G179252 NA non-coding downstream 125464 70874750 ~ 70875169 (-)
G179249 NA non-coding downstream 129631 70870800 ~ 70871002 (-)
G179240 NA non-coding downstream 142125 70858300 ~ 70858508 (-)
G179311 mef2a non-coding upstream 9309 71079513 ~ 71093345 (-)
G179372 NA non-coding upstream 30315 71100519 ~ 71100755 (-)
G179373 NA non-coding upstream 30667 71100871 ~ 71101149 (-)
G179748 NA non-coding upstream 394985 71465189 ~ 71465424 (-)
G179215 NA other downstream 94379 70905372 ~ 70906254 (-)
LOC110501848 NA other downstream 439778 70552263 ~ 70642587 (-)
LOC110494902 LOC106560839 other downstream 1296234 69648833 ~ 69767366 (-)
G179754 NA other upstream 404168 71474372 ~ 71474979 (-)
G180716 NA other upstream 1040764 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1802540 72833292 ~ 72877678 (-)
G182494 NA other upstream 1957180 73011478 ~ 73066724 (-)

Expression


Co-expression Network