G179311 (mef2a)


Basic Information

Item Value
gene id G179311
gene name mef2a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71079513 ~ 71093345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU203656
CAATAGTTTTACTTTAGTGAATGTAGAATACACATTTTTACAACAATCTCTAGCATGGTATCTTAGTCATTCAATAAAAAGTTCACTAGAATATTTATTGTATAATGAAGATAAAACAACACATTCAAGGGAAATAAAATGCAGATCAACTTAAAATTCTCTCTTGATTTTGTTTCATTCATGGCAACAAAGTCCAGCTTGTGCCGCCAAACGGTTTGAGTATCCAAACCGCAAACAGCTTCTTGAAGTGAACTATTAACTACAAACAATTACCAAATACATAGTTCTGTTTATAAAAGCCATACAGCAAAGCAGTGTACTCTTGCACAGCAAAGTGAAGAACGCTCTTTCAACAAAGTTCCGTTGTCTGATATAATCCTGTTCTTTCACATTCAATAGTTGTGCAGGTTTTTACACAGCACATAGACCAAAAGAGCAAGTGTATCACTTTACGTTCTCTATACATTCCTTGTGTGAATCTTACTTCACGGGAGGGCAGAGTGGGAAAGACGAACCAGTCTCTATGTTCTGTAATGTATGTCAGCTGCATTAGCGGCGTTAGTTTGGAGCTATGTGAGGCTTTTCTTGATTTATAACATGAGTCATTCTTTGGGATAAGGCTATTTTCTAACCGTGCATATAAAGAGTGAAGCTAGAAAAATTCCCTGATGTCCTATCAAGTGCTAAAGTGTGCATGTCATTTGTAATGAAGCTATGAATAAAAGACTGCTAAAGTCTTGTTGGACTAGTGTAATGGTATTATTGCTGTTCTGTAACCTGACATGTGTTCAAATGGATATTAAATCAGTTATGCTGTGTTTCTTATGCATGTCTAAAATAATTCAGAATTGATCAAGACTGAGGAAAATAATTTGTTCAAAAAGGTAGACATTGATAAAATATTATGTGCAACTGGCTATCCAGCTCCCTGACTCTATGGGACATGCAATAACATTTAATAGTAGATTGGACCCTTGAAGTGACGTTTTTTAAGGGTCCGCATCTGGGCAGAGTATGAGTTGGAAACTGCATAGATCACTATTGGCTTATTGCCAACTGCTATGGATCAAATGAAGGGGTGGAGGACAGGCGTGGAGGAGAAACACACAAGGGAAAATATAGCAAACGTAAAGAGATACTCCTTTTGTACAGCAAACTTCTCGTACAAATGTGTGCAATCCAGCAGTGTTGGATCAAGTCTATTCTGTTGCATTGTCTCTAGTATGTATTAGCTGCTGAATTGTCTGACACTTTACCACTGTGGGGATGGGGTATAATGCAAGCCAAGGCTACATGTAACAGACAATGACGTACATGCTTGCATGGTCTGATATGCCCACACAGGCAAATATACAACAGTGAAACAGAAAATGGCTGCTGCCACTCACCAGTACTACACACTTATGGGATCATGATTTCAGGGTTGTTCATTTCCTACTAGTGATGGGCCTCGAACATAGGGTATTTTGCTGTGCCAATTTATAAAACGGATTAATTTTATACATAATCATGACTGAGGATTACATTTAGGCTATGCTATTTACAATGTTTGCAACTTAATTTACTCATAAGTGTGAACATTTTCACCAGAGAGTGATCCATTAATGGATCATTTAATTAACCATAaatgggtcgttccaccaattcggtgccttttgagaagtatTAACttggtatacattttttttttgattcCACCTACTTTTTagattctgtcataaagagcataCATCATCTCAAGATGTTAGTGTGGGAAATacgggtgctgagggtgctgcagcaaccCTGAACAATCTGAATAAAACTAAAAACTagtcagccataaatcccctcgtgacagggggaatggaagcttgttgtgtgcaacagagagtggcaattgaatgcaagcttcacacatttaaaaaataaaataataattctaGCCTGTTTATCTACGAGTAAGAAGGTTGACGTATAATGCTCAAcccactcagttttccaccacaaaacaccagataattgccaaaaagagtagaacccgTTCACCTGCTTTTACTGTATGATTTGACCATTAGATGTTCaatatttattttgaaaaaatgtatatttaaaaaagaatagtttcaccatattaaaacgagagttcagttccGTAACTGGGTTGACCTTAAATGAATGTAAATTAATCATtgtcacatgaaataaataatctCCGGGAATGACTTTGTCAAATCAATGAAATAACttgggctttacaatgatggtgaaacttGGAGAGATTTTGCGAtgaagtgggttaaaatcttccttgAAGTGACACGGGACATGCAGATTTTgggattaagtgggttaaaatcttccttgAAGTGACACGGGACATGCAGATTTTgggattaagtgggttaaaatcttccttgAAGTGACACGGGACATGCAGATTTTgggattaagtgggttaaaatcttccttgAAGTGACACGGGACATGCAGATTTTgggattaagtgggttaaaatcttccttgAAGTGACACGGGACATGCAGATTTTTGGGATTAAGTGGGTTCAAATCTTCCTTGAAGTGACACGGGACATGCAGATTTCGGTCACTTTAGAAAGCCTTTATTCATATTAAAAAGTATATTAGTGTACAAAAcgctttccatgacagactgaccagcttaatacaggtgaaagatatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacatgttattaactaatgatttttaagccttgagacaattgagacatggattgtgtatcatTGCTATTCAgcgggtgaatgggtaagacaaaagatttaagtgccattaaacggggtatggtagtatgtgccaggcgcactggtttgtgtcaagaactgcaactctgctgggtttttcacactcaacagttttctgtgtgtatcaagaatggtccaccactcgaaggacatccagccaacttgacacaaatgtgggaagcattggagtcaacatgggccagcatccctctgtagtccatgccctgacaaattgagacagttctgagggcaaaaggggagagggggtgcaactcaatattatgaaggtgttcttaatgttttgtacactcagtgtatattaaagTGCACTTAATTTAACATAACAGGCgtttaaaatgcaatattggtgcacaatttctacttcaaATATCAAAGTGACGCAAAAGGCACTCTTTTTGTGGAGCGACCCAAATAGGTTTATTGGCATGGTTCATGAAATGGCATGTCTTTCAATCGAGCAAAGCACAATCACAATGGATGGTTTTTCAATGCTGAGATGGGACCTTGGGTTTGAAAGTTGGCAGTGTATTCAGCAGCTACAGGTAAAtagcctaaccctaaaccatattTTCCTCAGCGTTGAGATTATCCTTCACAACATAAGATATAGTGGAACTTTAACCTTACATCACTGTTATTACAATTTCTTAAGGACAGACATTCACCACTATTAAAGGGAAAACAACCTTAAAAACTACTCTCTGGAAAGAAAATCACTGACTATAATGGTAGTAATTCAATTTTGAAGAAAGTACAGTATAATTAATAAAATAGTAAATATTAACCAGTGAATAATCTACTTAATAAGGATCTCGCCCTGTAAACATGGCAGTAATCCACAAAAATATACCTTTTTCTTGAATCTGGTGATGGTACAATACATACGTACTTACACCaaggtgatatatatatatatatatatattaaagttGCTATTTACATAACAAAAGAAAGTGTTTGGCTCAAATGTTTAATTTAACAAACAGAACAGCAAGTGTTCATGGCTTGAGATATTGATTCAAGATCTGGCTTGCATGTCTTTATAATGTTTGTAACAAAGCACAGTAAAAACAAAACTAAAATGAACAATTGTTTTTTGAGAGAATTGCTAGGAAACCATAGCTACAAAATAACAGAAAGAAACGTACAGTACAGCTTTGGCTTACATTACCAATGAATTGTTGGAGCAATGAGAAGATGCCTTGCTATTACCATGTTACCAGTTCAACTGGACAATTTCCCATCATGTTAATGTCCCATATATCAGATTATAAAATGAATGTTATTATTGCAATATACTTTTTCCTATTTATTTTAGAACTAAACACATGACTCTGAGCCATGTCCTTCCCATACAGGATAGCTTTTCCTGTCTAAAACCACACAAGGGAAACCTCTTTCAAATGAAAAACAACTCTTTTTAGTCTCTGAGGTCGAAATTGTTTTAAAATTTGATTCCACATCTATTGATTTAATAAGTTCATAGAAGAGACAAATTGAGACAAAGTTGTATGAGATTAAAGTCGTATGAGTTTACACCATGTAGTGAAACATGAGCTCTAACAGTGGACGCCACAAGCAGGGGCCCTCAGCCAGCAGGCAACACTCTTGACTTTTTGGATTGTTTGTAACTTGCAACCACAACAGCGAAAACAGCAACTACAAGTGTCAGACTAGACCAGTGACTACAATAATCTAGAttcgtttttttcttcttttttttttctttgaacATCAGACTCCTGCAAACATCTAATTCGCACCCAGTACCTGATAACATCTGTTTGTGTACATAATTCAGTCCAACTTCTTGATTGTTTTTCTTATTAATGTGAGACGTATTTAATTTATTTGCCATTCCTTCTTACAAAATGAAATGGAgttaaataataatattataatgatAACTATAAGGACCTTTCCtaccccatccatctctcccccaagtctaccacctccctccctccgtctgacTAGCTGGTGACTGGAGGCCTGACTGAGTGACTCTATGTCACCCAGGTGTCCATGCGCATGCGCTTGACAGAGGGGCTCTCCCGGTTGTCCTCGGTTCCGGCTGGGGGTCTGCCCAACCCCATGGACGAGGAGTGGAAGTCCGGCCGGTGATCTTCGCGGTCGCTGCCATCGTACGAGCTGCAGGAGGAGCTGAGGCTGTCCACAGGCGAGCGGCCCAGGTCCTGCCGGCTGGacgcctgctgctgctgctgctgctgctgctgctgttgctgttgctgctggGGGAAGCCAGAGGAGGTGACGCGCTCCCGCGGTGGGGAGATGGGCTCTGACTTGATGTTGATGTTCTGGCTGGTGTTGATAGAGAGGTTGGAGCCCTGAGGTAGGTGACCACCACCCACCAAAGAGCTGAGAGCTGCCTGGCCCAGTTGATGTTGTTGCCATGCCGACATGGAGCCCAAAGAGAGCCCTGGAGAGCCGAAGCCCTGTAGGGAGGAGATCTCTGCACTGCTCAGGGAGTACtCGGTGTTGTAGCCGGTGGGCATGCCTGAGTAGACCAGGCCTTGGGGGGGCAGACTGGGGGTGGTGACAGACACTACTGGGGTGGCGagtagctgggactgggagctgCTTATCCTGTGGGTGTTCAGTGGGGGCATCATGCCTTTGCTGGACGGGGGGATCAGCACTCTCAGGTCTGGCTTGCGGTTGCCCATCCCCATGTTCCCTCCAGGGGGCGGTGGAGACTTGGTGGGCATGACTTTCCCCAGGCCGTTCCCGCTGGTTGCGCCCAGGAGTCCCGGAGAGCCCCTAGGGTTGACAAAGCCGTtccctgcagagagagacagagacagaagcagTCATGGGACTGTGAGACACTACAACAACAGTCATCTGCCAAATCTCCAACGCACCATTTCAAAGCTGCATAGCTTGCCACGGC

Function

symbol description
mef2a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy.

NR:

description
myocyte-specific enhancer factor 2A isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203656 True 5757 lncRNA 0.45 4 71079513 71093345

Neighbor

gene id symbol gene type direction distance location
ttc23 ttc23 coding downstream 134154 70926632 ~ 70945359 (-)
LOC118941475 NA coding downstream 303532 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 306231 70769140 ~ 70773282 (-)
arpin arpin coding downstream 311504 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 337878 70734177 ~ 70741635 (-)
LOC118941478 NA coding upstream 10961 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 40920 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 328664 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 918913 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 977136 72070481 ~ 72090783 (-)
G179310 mef2a non-coding downstream 9309 70998045 ~ 71070204 (-)
G179320 NA non-coding downstream 71595 71006689 ~ 71007918 (-)
G179305 NA non-coding downstream 92155 70987098 ~ 70987358 (-)
G179216 NA non-coding downstream 174258 70903945 ~ 70905255 (-)
G179252 NA non-coding downstream 204344 70874750 ~ 70875169 (-)
G179372 NA non-coding upstream 7174 71100519 ~ 71100755 (-)
G179373 NA non-coding upstream 7526 71100871 ~ 71101149 (-)
G179748 NA non-coding upstream 371844 71465189 ~ 71465424 (-)
G179751 NA non-coding upstream 376285 71469630 ~ 71469847 (-)
G179215 NA other downstream 173259 70905372 ~ 70906254 (-)
LOC110501848 NA other downstream 518658 70552263 ~ 70642587 (-)
G179754 NA other upstream 381027 71474372 ~ 71474979 (-)
G180716 NA other upstream 1017623 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1779399 72833292 ~ 72877678 (-)
G182494 NA other upstream 1934039 73011478 ~ 73066724 (-)

Expression


Co-expression Network