G180456


Basic Information

Item Value
gene id G180456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71988309 ~ 71988640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU204869
CTTCAATGGgattttcaatgtctgcttttttattttttacacatctaccaatacaaGGCGTTACATAACCTCCCTAGTTgtgtggttaaatctgtgtttgaaattcactgatcgactgagggaccttacggataattgtttgtgtggggtacagagatgaggtagtcattcaaaaatcatgttaaacactattattgcacacagagtgagtccatgcaacttattatgtgacttgttaagcacatttttactcctgaatttatttaggtttcccataacaaagggggtgaatagttacTGACTCAAGCCATTacagattttcatttttaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204869 True 332 lncRNA 0.36 1 71988309 71988640

Neighbor

gene id symbol gene type direction distance location
LOC118937292 NA coding upstream 5488 71961719 ~ 71982821 (+)
LOC118941481 NA coding upstream 28210 71944685 ~ 71960099 (+)
LOC110495533 lysmd4 coding upstream 216063 71766251 ~ 71772246 (+)
LOC110495511 arrdc4 coding upstream 274579 71705084 ~ 71713730 (+)
LOC110495497 NA coding upstream 545546 71432338 ~ 71442763 (+)
LOC110495562 LOC106561144 coding downstream 7054 71995694 ~ 72008263 (+)
LOC110495604 LOC106573778 coding downstream 71216 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 coding downstream 262244 72250884 ~ 72253809 (+)
LOC110495632 LOC106561195 coding downstream 348162 72336802 ~ 72343356 (+)
tln2b LOC106561152 coding downstream 899677 72888317 ~ 73030225 (+)
G180454 NA non-coding upstream 1318 71986771 ~ 71986991 (+)
G180449 NA non-coding upstream 9479 71978628 ~ 71978830 (+)
G180438 NA non-coding upstream 27108 71960982 ~ 71961201 (+)
G179651 NA non-coding upstream 513397 71474644 ~ 71474912 (+)
G180458 NA non-coding downstream 1438 71990078 ~ 71990556 (+)
G180468 LOC106561145 non-coding downstream 29463 72018103 ~ 72018501 (+)
G180483 NA non-coding downstream 54746 72043386 ~ 72046632 (+)
G180481 NA non-coding downstream 63664 72052304 ~ 72052540 (+)
G180501 NA non-coding downstream 87293 72075933 ~ 72076159 (+)
igf1ra igf1r other upstream 1180405 70794530 ~ 70905277 (+)
G177812 NA other upstream 1874869 70107286 ~ 70113440 (+)
G177067 NA other upstream 2530876 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 3030423 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 3126941 68860838 ~ 68861368 (+)
G181995 NA other downstream 1352740 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1588125 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1618252 73606892 ~ 73610237 (+)

Expression


Co-expression Network