G180501


Basic Information

Item Value
gene id G180501
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72075933 ~ 72076159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU204925
cacctatacacacgattctgacagaatctctgaccaaacatgaagtcagcaggagaatgTACCCCGGccatggaggtggaggagcgTGTCATGGAACATACAGAGATGATTTACAATCTGAGCACCgccatggatcgcgttgtccagaatatggaccgctgggagacacCCAGGAAGGTTTTCCAGTGCCTCCACTAGCACAACCGAGGGGAGACTCTGAGTGCCCC

Function

NR:

description
PREDICTED: PDZ domain-containing protein 11 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204925 True 227 lncRNA 0.42 1 72075933 72076159

Neighbor

gene id symbol gene type direction distance location
LOC110495604 LOC106573778 coding upstream 10734 72059717 ~ 72065199 (+)
LOC110495562 LOC106561144 coding upstream 67670 71995694 ~ 72008263 (+)
LOC118937292 NA coding upstream 93112 71961719 ~ 71982821 (+)
LOC118941481 NA coding upstream 115834 71944685 ~ 71960099 (+)
LOC110495533 lysmd4 coding upstream 303687 71766251 ~ 71772246 (+)
LOC110533853 LOC106561194 coding downstream 174725 72250884 ~ 72253809 (+)
LOC110495632 LOC106561195 coding downstream 260643 72336802 ~ 72343356 (+)
tln2b LOC106561152 coding downstream 812158 72888317 ~ 73030225 (+)
LOC110495666 LOC106573503 coding downstream 979969 73056128 ~ 73069598 (+)
lactb LOC106561153 coding downstream 996258 73072417 ~ 73075269 (+)
G180481 NA non-coding upstream 23393 72052304 ~ 72052540 (+)
G180483 NA non-coding upstream 29301 72043386 ~ 72046632 (+)
G180468 LOC106561145 non-coding upstream 57432 72018103 ~ 72018501 (+)
G180458 NA non-coding upstream 85377 71990078 ~ 71990556 (+)
G180456 NA non-coding upstream 87293 71988309 ~ 71988640 (+)
G180502 LOC100380853 non-coding downstream 2915 72079074 ~ 72079455 (+)
G180809 NA non-coding downstream 173484 72249643 ~ 72249876 (+)
G180844 NA non-coding downstream 194834 72270993 ~ 72271320 (+)
G180855 NA non-coding downstream 203044 72279203 ~ 72279529 (+)
G180865 NA non-coding downstream 211857 72288016 ~ 72288241 (+)
igf1ra igf1r other upstream 1268029 70794530 ~ 70905277 (+)
G177812 NA other upstream 1962493 70107286 ~ 70113440 (+)
G177067 NA other upstream 2618500 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 3118047 68956263 ~ 68957886 (+)
G181995 NA other downstream 1265221 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1500606 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1530733 73606892 ~ 73610237 (+)
G182144 NA other downstream 1546377 73622536 ~ 73624518 (+)

Expression


Co-expression Network