G180502 (LOC100380853)


Basic Information

Item Value
gene id G180502
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72079074 ~ 72079455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU204926
cttacccgttccacaacggccgtggtcgcatcTGTCGGTGGATTTCTTAACTGATCTTCCACCTTCATAGGGTAACACCATGATCCTGGTTGTTATGGatcgtttttctaagtcctgtcgtctcctccctttgcccggtctccctacagccTTACCAACTGCgtaggccctgtttacacacgtcttctatggggtgcctgaggatagagtgtctgatcggggtccccagatcacgtcaagggtctggaaggcgttcatggaacatctgggggtcttggtcagccttacctcaggttttcaccccaagAGTattgggcaggtggagagagttaaccaggatgtgggtaggtttctgctgtcttattgccaggacaggccgggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204926 True 382 lncRNA 0.51 1 72079074 72079455

Neighbor

gene id symbol gene type direction distance location
LOC110495604 LOC106573778 coding upstream 13875 72059717 ~ 72065199 (+)
LOC110495562 LOC106561144 coding upstream 70811 71995694 ~ 72008263 (+)
LOC118937292 NA coding upstream 96253 71961719 ~ 71982821 (+)
LOC118941481 NA coding upstream 118975 71944685 ~ 71960099 (+)
LOC110495533 lysmd4 coding upstream 306828 71766251 ~ 71772246 (+)
LOC110533853 LOC106561194 coding downstream 171429 72250884 ~ 72253809 (+)
LOC110495632 LOC106561195 coding downstream 257347 72336802 ~ 72343356 (+)
tln2b LOC106561152 coding downstream 808862 72888317 ~ 73030225 (+)
LOC110495666 LOC106573503 coding downstream 976673 73056128 ~ 73069598 (+)
lactb LOC106561153 coding downstream 992962 73072417 ~ 73075269 (+)
G180501 NA non-coding upstream 2915 72075933 ~ 72076159 (+)
G180481 NA non-coding upstream 26534 72052304 ~ 72052540 (+)
G180483 NA non-coding upstream 32442 72043386 ~ 72046632 (+)
G180468 LOC106561145 non-coding upstream 60573 72018103 ~ 72018501 (+)
G180458 NA non-coding upstream 88518 71990078 ~ 71990556 (+)
G180809 NA non-coding downstream 170188 72249643 ~ 72249876 (+)
G180844 NA non-coding downstream 191538 72270993 ~ 72271320 (+)
G180855 NA non-coding downstream 199748 72279203 ~ 72279529 (+)
G180865 NA non-coding downstream 208561 72288016 ~ 72288241 (+)
G180893 NA non-coding downstream 233881 72313336 ~ 72313614 (+)
igf1ra igf1r other upstream 1271170 70794530 ~ 70905277 (+)
G177812 NA other upstream 1965634 70107286 ~ 70113440 (+)
G177067 NA other upstream 2621641 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 3121188 68956263 ~ 68957886 (+)
G181995 NA other downstream 1261925 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1497310 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1527437 73606892 ~ 73610237 (+)
G182144 NA other downstream 1543081 73622536 ~ 73624518 (+)

Expression


Co-expression Network