G180945


Basic Information

Item Value
gene id G180945
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72349845 ~ 72351306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU205420
tcaggaggaatgggccaaaattctcccaacttattgtgggaagcttgccgaaggctacccaaaacgtttgaccaaagttaaacaatttaaaagcaatactaccaattactaattgagtggatgtagacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctagtattattctgacatttcacattcttaaaataaagctgtgatcctaactgacctaagacatggagtttttactaggattaaatgtcaggaattgtgtaaaactgagtttaaatgtatttggctaagttgtatgtaaacttccgacttcaactgtgttttCAAAGAAGCATGGATCATTGTTTGGAATGTATATATTAATGAGCCCCCTCCCCTCTTTTAATTATTTTCTTTGTTGGACATAATTGACTGATTTTAATGTAGGAAACCTGTTCCCAAGTAGTAGAGAGGCATATGTGATCATATCCCACTGAaatcaaggtttaaaaatcccaATGTATTCAAGGTTTGAAAAAGttctgtttttgtcaaatactatATCTGTGTGTGATtattgcggtcaatttgcagtgtacaaattgcTTAGAACTATGTGCCGGCCCCCCAACCTGCTCAAGGAAAAATCGACACACGGCTGAATGTAATTGGTGAACCCTGGTTTAAATCATAAGACGCTTATCTGCATATTACTTCAAACAATAGTTCTCCCGTGGAGTTGTCTTTTGACTTGTCCAGGAAACATGGTTTTTCATTTAATAGAGGCATAATAACCAAGCATACCAGGAAAAACTATTTTCCATGGATATATCCATTTCGTTAAGATGTGCCGAGGAGGAAGCCTATAAATGAATTCCTCTTGGTTCAAGTTAAGTTAATCTTGCAGGCAGACATTACATATGGACATGGAACATCATAAATGTAAATGGATGCAAATTCAGCTCGAGGACATCTAGATGCTCAATGTGTGGACTCCATGGGTGGCTTCATTATAGTTTTCATTGTGCAATGTGAAGAGCAGCTTTATGTGAATTCAAAAATATTGCCATTTTCCTCTATGATGATTTGAATGTTGTGGTCCAGTATATATTGTATTCCACCCTAATAGCCTTTATAATTGAAGTGGTTGGGCATAGTGAAGTGTGATTGTACCTTACAATATGTATAGTCTTGGTTGGTTCTTTGGGGATGTGTTATTTGTGGAAGTTATGTCCAGTGCCACAGGAAAATCACTGCATAGTGTGTTTGAAGATGACCAAACTGTAAAatgtgattggttggttggtttatTTGTTTTGTCATCCAAAAAAATAGtatattatgttgttgttgtgtaataCATTGATGGCCACATTCAGTAGATGTTACAGTAGAAGACAAACAGATACTTTAATATTGGATTTACTGGTACCAGAAAATGTTGCAGAAAACCCCAGAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205420 True 1462 lncRNA 0.49 1 72349845 72351306

Neighbor

gene id symbol gene type direction distance location
LOC110495632 LOC106561195 coding upstream 6489 72336802 ~ 72343356 (+)
LOC110533853 LOC106561194 coding upstream 96036 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 coding upstream 284646 72059717 ~ 72065199 (+)
LOC110495562 LOC106561144 coding upstream 341582 71995694 ~ 72008263 (+)
LOC118937292 NA coding upstream 367024 71961719 ~ 71982821 (+)
tln2b LOC106561152 coding downstream 537011 72888317 ~ 73030225 (+)
LOC110495666 LOC106573503 coding downstream 704822 73056128 ~ 73069598 (+)
lactb LOC106561153 coding downstream 721111 73072417 ~ 73075269 (+)
tmem266 LOC106561154 coding downstream 732983 73084289 ~ 73146123 (+)
isl2a LOC106561155 coding downstream 812453 73163759 ~ 73169203 (+)
G180943 NA non-coding upstream 1170 72348311 ~ 72348675 (+)
G180903 NA non-coding upstream 26335 72323230 ~ 72323510 (+)
G180902 NA non-coding upstream 27064 72322543 ~ 72322781 (+)
G180901 NA non-coding upstream 27697 72321926 ~ 72322148 (+)
G180895 NA non-coding upstream 33860 72315677 ~ 72315985 (+)
G180986 NA non-coding downstream 27832 72379138 ~ 72379344 (+)
G180989 NA non-coding downstream 29371 72380677 ~ 72380890 (+)
G181024 NA non-coding downstream 55645 72406951 ~ 72407308 (+)
G181013 NA non-coding downstream 82551 72433857 ~ 72441882 (+)
G181040 NA non-coding downstream 105574 72456880 ~ 72463212 (+)
igf1ra igf1r other upstream 1541941 70794530 ~ 70905277 (+)
G177812 NA other upstream 2236405 70107286 ~ 70113440 (+)
G177067 NA other upstream 2892412 69456558 ~ 69457433 (+)
G181995 NA other downstream 990074 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1225459 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1255586 73606892 ~ 73610237 (+)
G182144 NA other downstream 1271230 73622536 ~ 73624518 (+)
G183361 NA other downstream 2178343 74529649 ~ 74535026 (+)

Expression


Co-expression Network