G182443


Basic Information

Item Value
gene id G182443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72925725 ~ 72928284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU206997
tgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacaaacaaaaaaacatcaaaaaaaattttgggtaaccagttgcatattttagatcacaagatgacaaaggtatagtttgagcaaagtaaagcttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacaaacaaaaatacatcaaaaaaaatttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatccaaaaaatgtttgggtaaccagttgcatattttagatcacaagcttgaattttgagcatgacaaatttgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatttttttggggtaaccagttgcatattttagatcaccagttgacaaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaattaaggaaacataaacaaaaaaaatcaaaaaatgtttgttgcacatttt
>TU207001
aaaaaaatttgagcatgacaaattcgtgatggtacctgcccattgagacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaatacatcaaaaaaatgttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcaaaaaaaattttgggtaaccagttgcatattttagatcacaagatgacaaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaacattttttttttgggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaat
>TU207002
tgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacaaacaaaaaaacatcaaaaaaaattttgggtaaccagttgcatattttagatcacaagatgacaaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaacattttttttttgggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206997 False 729 lncRNA 0.32 3 72925725 72928284
TU207001 False 497 lncRNA 0.34 3 72926337 72927297
TU207002 True 374 lncRNA 0.35 2 72926337 72928284

Neighbor

gene id symbol gene type direction distance location
c2cd4a LOC106561196 coding downstream 48052 72833292 ~ 72877678 (-)
LOC118937294 NA coding downstream 150076 72774064 ~ 72775649 (-)
roraa LOC106561150 coding downstream 181213 72456866 ~ 72744512 (-)
LOC118941485 NA coding downstream 615754 72300332 ~ 72309971 (-)
LOC110495618 LOC106561149 coding downstream 750278 72106006 ~ 72175447 (-)
LOC110495704 nrg4 coding upstream 147736 73076020 ~ 73078379 (-)
etfa LOC100194695 coding upstream 217937 73146221 ~ 73157311 (-)
scaper LOC106561156 coding upstream 248437 73176721 ~ 73292819 (-)
LOC100653450 LOC106561160 coding upstream 395891 73324175 ~ 73328878 (-)
kti12 kti12 coding upstream 437282 73365566 ~ 73373678 (-)
G181545 NA non-coding downstream 161322 72764193 ~ 72764403 (-)
G181544 NA non-coding downstream 162048 72763470 ~ 72763677 (-)
G181529 NA non-coding downstream 168019 72757448 ~ 72757706 (-)
G181520 NA non-coding downstream 173236 72752264 ~ 72752489 (-)
G182487 NA non-coding upstream 58880 72987164 ~ 72989040 (-)
G182506 NA non-coding upstream 73812 73002096 ~ 73089478 (-)
G182508 NA non-coding upstream 75615 73003899 ~ 73004346 (-)
G182494 NA non-coding upstream 83194 73011478 ~ 73066724 (-)
G182552 NA non-coding upstream 178761 73107045 ~ 73113341 (-)
G180716 NA other downstream 814062 72110968 ~ 72111663 (-)
G179754 NA other downstream 1450746 71474372 ~ 71474979 (-)
LOC110495479 mctp2 other downstream 1783541 71134265 ~ 71164057 (-)
G179310 mef2a other downstream 1855521 70998045 ~ 71070204 (-)
G182708 NA other upstream 416666 73344950 ~ 73345847 (-)
G182882 NA other upstream 747928 73676212 ~ 73676423 (-)
G183096 NA other upstream 1064794 73993078 ~ 73993545 (-)

Expression


Co-expression Network