XLOC_002132


Basic Information

Item Value
gene id XLOC_002132
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23983307 ~ 23992917 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005894
GAGTCTGAGGGCACGGACAGTGAGCGAGTGGAGATGGTGGTGCCTATTTACGAGAGTGCAGATTGTTTGAGAGATCAGGACTTCAGGACAAGCATGCAACAACCGATTCAGCAAACAGGAAGTGACTGTGTGAGGAAGAAAAGTTTCAGAGCATCTACAGTGGGTTTGTCTCTgctgttttttcttctggtgacTGCAGTTATAGCGCTGAGTGTGTACATCtatacaaacaAGAGACGCCAGCTTCTGACCAACATCACCAACATTACAGAAGACAGAAATGAGCTGCTGAAAAATATCACCAACCTCCCTGAAGACAGAGATGAGTTGCTTAAAAACATCACCAACCTCACAAAAGACAGAGATGAGCTACTCAACAATATCACTAAACTCAGAGAAGACAAAGATGAGCTACAACAACATCACCAACATTACAGAAGACAGAGAAAAGAGCTACTAACCAACAATACCAGACtaactgaacaaaacaaaaagcttaaACAATGGGAAAAAAAGATGGTCAAaagattgaaCCAAAGAGATGGATGGTTTTACTATCAGTCCAGTTTATACTTCATTTCCTCTGAGAAGAAGAGCTGGTCTGAGAGCAGAAGATACTGTACAGACAGAAGAGGAGATCTGAtcattataaacagcagagaggaACAAAATTTTGTTCACAAGAAGGCTGGTCTTTCCGGAGCCTGGATTGGTCTGACTGACCATGAAAAAGTGGGCATTTGGAAATGGGTTGATGGCAGCACATTGACCACTGGGATTTGGGCatctggacaaccaaatgcacaGACAGAAGCAAACTGCGTTACGCTTATTTCCTCATCATGGTATAACAAGTTGTGTACTGATAAAATGAAATGGGTGTGCGAgaagaac
>TCONS_00005709
TTCAGAAGAGCTCCAGTGTATTTGATGCTGTTGTGTTTTCTCCTGCTGACTGCAGTCATACTGTTGAGTGTCTACAACTACCAGAGAGAAGTGGTGCTAAACAATATTCACAACCTCACAGAAGAGAAAGATCCAATATTAACCAAGATGACCAACCTAACTCAACTAAACAATCAGATTGAACCaaattataaaatACTTGTGTTTACAGATGGATGGTTTTACTATCAGTCCAGTTTATACTTCATTTCCTCTGAGAAGAAGAGCTGGTCTGAGAGCAGAAGATACTGTACAGACAGAAGAGGAGATCTGAtcattataaacagcagagaggaACAAAATTTTGTTCACAAGAAGGCTGGTCTTTCCGGAGCCTGGATTGGTCTGACTGACCATGAAAAAGTGGGCATTTGGAAATGGGTTGATGGCAGCACATTGACCACTGGGATTTGGGCatctggacaaccaaatgcacaGACAGAAGCAAACTGCGTTACGCTTATTTCCTCATCATGGTATAACAAGTTGTGTACTGATAAAATGAAATGGGTGTGCGAgaagaac
>TCONS_00004125
TGTTTACAGATGGATGGTTTTACTATCAGTCCAGTTTATACTTCATTTCCTCTGAGAAGAAGAGCTGGTCTGAGAGCAGAAGATACTGTACAGACAGAAGAGGAGATCTGAtcattataaacagcagagaggaACAAAATTTTGTTCACAAGAAGGCTGGTCTTTCCGGAGCCTGGATTGGTCTGACTGACCATGAAAAAGTGGGCATTTGGAAATGGGTTGATGGCAGCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000086718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005894 False 894 lncRNA 0.42 8 23983307 23992917
TCONS_00005709 False 564 lncRNA 0.41 5 23990633 23992917
TCONS_00004125 True 233 processed_transcript 0.42 2 23992381 23992699

Neighbor

gene id symbol gene type direction distance location
XLOC_002131 NA coding upstream 392249 23588675 ~ 23591058 (+)
XLOC_002130 CR847844.2 coding upstream 423763 23553533 ~ 23559544 (+)
XLOC_002129 zmp:0000001103 coding upstream 432351 23548674 ~ 23550956 (+)
XLOC_002128 NA coding upstream 439241 23542617 ~ 23544066 (+)
XLOC_002127 CR847844.1 coding upstream 441419 23537576 ~ 23541888 (+)
XLOC_002133 gbe1a coding downstream 55746 24048663 ~ 24298042 (+)
XLOC_002134 NA coding downstream 103322 24096239 ~ 24096470 (+)
XLOC_002135 NA coding downstream 104138 24097055 ~ 24097310 (+)
XLOC_002136 NA coding downstream 323936 24316853 ~ 24375160 (+)
XLOC_002137 CU467963.3 coding downstream 360833 24353750 ~ 24353866 (+)
XLOC_002122 CT827808.1 non-coding upstream 565360 23417833 ~ 23417947 (+)
XLOC_002119 NA non-coding upstream 944017 23034329 ~ 23039290 (+)
XLOC_002117 NA non-coding upstream 1017881 22960289 ~ 22965426 (+)
XLOC_002138 CT573163.1 non-coding downstream 404181 24397098 ~ 24398671 (+)

Expression


Co-expression Network