Gene
RNA
| Item | Value |
|---|---|
| gene id | G181989 |
| gene name | LOC107750509 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 73327462 ~ 73328861 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tetraspanin-3 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU206523 | True | 581 | lncRNA | 0.44 | 2 | 73327462 | 73328861 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495782 | LOC106561158 | coding | upstream | 10512 | 73299580 ~ 73316950 (+) |
| isl2a | LOC106561155 | coding | upstream | 158259 | 73163759 ~ 73169203 (+) |
| tmem266 | LOC106561154 | coding | upstream | 181339 | 73084289 ~ 73146123 (+) |
| lactb | LOC106561153 | coding | upstream | 252193 | 73072417 ~ 73075269 (+) |
| LOC110495666 | LOC106573503 | coding | upstream | 257864 | 73056128 ~ 73069598 (+) |
| si:dkey-24l11.2 | LOC106561161 | coding | downstream | 22939 | 73351800 ~ 73361169 (+) |
| LOC110495809 | LOC106561197 | coding | downstream | 32448 | 73361309 ~ 73362530 (+) |
| LOC110495840 | LOC106561167 | coding | downstream | 71398 | 73400259 ~ 73405787 (+) |
| slc28a1 | LOC106561167 | coding | downstream | 80191 | 73409052 ~ 73418838 (+) |
| malt3 | LOC106561168 | coding | downstream | 107273 | 73436134 ~ 73454862 (+) |
| G181948 | NA | non-coding | upstream | 30779 | 73269027 ~ 73296683 (+) |
| G181930 | LOC106561156 | non-coding | upstream | 54430 | 73244895 ~ 73273032 (+) |
| G181887 | NA | non-coding | upstream | 133097 | 73193347 ~ 73194365 (+) |
| G181841 | NA | non-coding | upstream | 169609 | 73111501 ~ 73157853 (+) |
| G181854 | NA | non-coding | upstream | 194864 | 73132159 ~ 73132598 (+) |
| G181994 | NA | non-coding | downstream | 10602 | 73339463 ~ 73340072 (+) |
| G181965 | NA | non-coding | downstream | 36718 | 73365579 ~ 73366983 (+) |
| G182020 | NA | non-coding | downstream | 84801 | 73413662 ~ 73414721 (+) |
| G182124 | NA | non-coding | downstream | 244744 | 73573605 ~ 73573921 (+) |
| G182037 | NA | non-coding | downstream | 258243 | 73587104 ~ 73587665 (+) |
| LOC110533853 | LOC106561194 | other | upstream | 1073735 | 72250884 ~ 72253809 (+) |
| LOC110495604 | LOC106573778 | other | upstream | 1262267 | 72059717 ~ 72065199 (+) |
| igf1ra | igf1r | other | upstream | 2519558 | 70794530 ~ 70905277 (+) |
| G177812 | NA | other | upstream | 3214022 | 70107286 ~ 70113440 (+) |
| G177067 | NA | other | upstream | 3870029 | 69456558 ~ 69457433 (+) |
| G181995 | NA | other | downstream | 12519 | 73341380 ~ 73342277 (+) |
| LOC110501876 | LOC106561170 | other | downstream | 247904 | 73456669 ~ 73580075 (+) |
| G182139 | LOC106561173 | other | downstream | 278031 | 73606892 ~ 73610237 (+) |
| G182144 | NA | other | downstream | 293675 | 73622536 ~ 73624518 (+) |
| G183361 | NA | other | downstream | 1200788 | 74529649 ~ 74535026 (+) |
