G182020



Basic Information


Item Value
gene id G182020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73413662 ~ 73414721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU206558
ctcagggaagctcatctgcgggcttgtcatcctcaccagggtattgacctgactgcagttcggcatcgcaACTCACTTTCTTGGGCAAATCCTAATTTTCGatagccactggcacgctggagaagtgtgctcttcacagatgaatcccggtttcaactgtaccgggcaaatGGCAGACGGcgtcgtgtgggcaagcggtttgctgatgtcaacgttgtgaacagagtgccccatggtggcggtggggttatgatatggtctggcataagctacggacaacgaacacaatttgattttatcaatggcaatttgaatgcacagagatactgtgacgagatcctgaagcccaATGTTGTACAATTCATCCGCCTccttcacctcatgtttcagcatgataatgcacagccccatgtcgcaaggatctgaacacaattcctggaagctaaaaatgtcccagatattccatagcctgcatactcaccagacatcacccaTTTAGCATGttagggatgctctggatcgacatgtacaacagtgtgttccagttcccaccagaggagtgggacaacattccacaggccacatccaacagcctgatcaactctatgtggaggagatgtgacgtgctacatgaggcaaatggtgttcacaccagatactgactggttttctgatccacacaccTACCTTTTACAAAATATACATCTGTGACCaagagatgcatatctgtattcccagtcatgtgaaatctttagattagggcctaacaaatgtatttcaattgactgatttccttatatgaactctaaCACAGTAAAATCTTAAAAAATTATCA

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU206558 True 835 lncRNA 0.39 2 73413662 73414721

Neighbor


gene id symbol gene type direction distance location
LOC110495840 LOC106561167 coding upstream 7875 73400259 ~ 73405787 (+)
LOC110495809 LOC106561197 coding upstream 51132 73361309 ~ 73362530 (+)
si:dkey-24l11.2 LOC106561161 coding upstream 52493 73351800 ~ 73361169 (+)
LOC110495782 LOC106561158 coding upstream 96712 73299580 ~ 73316950 (+)
isl2a LOC106561155 coding upstream 244459 73163759 ~ 73169203 (+)
malt3 LOC106561168 coding downstream 21413 73436134 ~ 73454862 (+)
trnah-gug-2 NA coding downstream 40711 73455432 ~ 73455503 (+)
LOC110501876 LOC106561170 coding downstream 41948 73456669 ~ 73580075 (+)
LOC110495913 ankrd34c coding downstream 318674 73733395 ~ 73737729 (+)
idh2 LOC100194640 coding downstream 342251 73756972 ~ 73768531 (+)
G181859 NA non-coding upstream 6325 73136787 ~ 73407337 (+)
G181965 NA non-coding upstream 46679 73365579 ~ 73366983 (+)
G181994 NA non-coding upstream 73590 73339463 ~ 73340072 (+)
G181989 LOC107750509 non-coding upstream 84801 73327462 ~ 73328861 (+)
G181948 NA non-coding upstream 116979 73269027 ~ 73296683 (+)
G182124 NA non-coding downstream 158884 73573605 ~ 73573921 (+)
G182037 NA non-coding downstream 172383 73587104 ~ 73587665 (+)
G182154 LOC108230026 non-coding downstream 220906 73635627 ~ 73636093 (+)
G182155 LOC106573487 non-coding downstream 221829 73636550 ~ 73636988 (+)
G182209 NA non-coding downstream 291611 73706332 ~ 73766435 (+)
G181995 NA other upstream 71385 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1159935 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1348467 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2605758 70794530 ~ 70905277 (+)
G177812 NA other upstream 3300222 70107286 ~ 70113440 (+)
G182139 LOC106561173 other downstream 192171 73606892 ~ 73610237 (+)
G182144 NA other downstream 207815 73622536 ~ 73624518 (+)
G183361 NA other downstream 1114928 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1296860 74660359 ~ 74732682 (+)

Expression



Co-expression Network