G182139 (LOC106561173)


Basic Information

Item Value
gene id G182139
gene name LOC106561173
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73606892 ~ 73610237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU206683
TGACAGAGAAATCAAGAAACTTTATTCACAAACATGAAATcagtttaaaaaaacaatttcacattattaaaatcaTAACAATCTTCATGTCAGCACAATAATCTAATCCTGATTAAAAACAGTAGATGTGCAGTGGGGAGTGTTTCTCCCAGTATATAATCATACTCCCTGAGGTGGTGAGCAAACATAAAAATCAAACCATATCATTGATTTAAAAGTTTAACTGATAATGAAATCTTTGGCTCCATGTCCCTTTTTTCTACTCTTGCCCCCATGGCATGCAGAATTCAACATTCACAGCACAGGAAGGGGATAAGATGAGCAGCCAGCCAGTCCACACATGTTTTTCCCACGCTCAATGAAGAAATAGCCTTTCATTCCCCAGCTGCTTCCCCAGGAGTTCTTCACTATCCAGTAGGGTGTGCCCTTCTCCTCACTATACCCCACAGCCAGCACTGCATGATTCACTGTGTCTGTGGTGTTGTGACACTCCATGCTGGTGTACACACCACCATCATAATGCATGAAATCAGAGGTCACCTCATAGGCAAGGCTGACAGGGTTGAATCTGGCCACTGCATCCAGCATACCCATTTCATCATACTTTGTTATGTTGACTACATCTTTAACAAAAGCAGCAGCCAACTCAGTCTTGAATTTGCAAGTGTCATCATGTGCAGTGTATGGATAGTCCTCCTCTGTCATGATTCCCTTGTTATACTTGATGTACTCAAATGCTTGACTGGGGAGCCCgCCATTACAGCCGTGGTTGTTGAAGGCCTGAGCACAGTCCACTAGTTGCTGCTCTGACAGTTGTAGGAGTTTCCCTGTTGCGATTGCTGTGACTGACTCCAAACAGCCTGTAGTGGAAAAGGTCCAGCAGCTACCACAGGGCCCCTGGTTCTTCACCGCTGTGACATAGTGCCCCTTCTTTCTCCAGTCGACCGACTCTGGATATGGTCCATTGCTGCTCACATGACTCCCTTTAGTGGCAGAACAGTTCTGGGGCTCAGTCAAGAGGAAAGATTTTCTGAATTCAGCAAACGTCAGGTCAGAGAACTGATTCAGTCCCATTGTGAACGTGTGATTTCCTTCATTGTGATAGTCAATCCTCCTCTTGTTCTCAATGAAGATCTGAAGTCTGTGGTAGTACTCCTCCATGTCATACACCTTGTTGTACTGTGACATCCATAACTTAAAGTGATATTCGCCCTCCTCGGAAAACGGATATAAAGAAGTAACAGAGTATACGGCAAATATCAACAAAACCAAGATCTTCATACTTCAAAGTTTGGTAAAGCTGTTGTCTTCCTGCAACAAACAGTGAGAGCAGTGAATGAACTAACCGAAAGTCACGAGGCTTGATCACTTCCCGAATTCCCCGTGACAGTGCAAAAGGTGACGAAATATACGCTGAACTTTTattatacataaataaaaattcaagtaaagttgctgcagtgtgtttgtgtgtgatagaggtggcagagagaaaaata

Function

NR:

description
pro-cathepsin H-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206683 True 1499 TUCP 0.40 12 73606892 73610237
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Neighbor

gene id symbol gene type direction distance location
LOC110501876 LOC106561170 coding upstream 28712 73456669 ~ 73580075 (+)
trnah-gug-2 NA coding upstream 151389 73455432 ~ 73455503 (+)
malt3 LOC106561168 coding upstream 152030 73436134 ~ 73454862 (+)
slc28a1 LOC106561167 coding upstream 188054 73409052 ~ 73418838 (+)
LOC110495840 LOC106561167 coding upstream 201105 73400259 ~ 73405787 (+)
LOC110495913 ankrd34c coding downstream 123158 73733395 ~ 73737729 (+)
idh2 LOC100194640 coding downstream 146735 73756972 ~ 73768531 (+)
LOC110495946 LOC106561177 coding downstream 273314 73883551 ~ 73984737 (+)
LOC110495967 LOC106573468 coding downstream 389032 73999269 ~ 74010559 (+)
LOC110495989 LOC106573469 coding downstream 459727 74069964 ~ 74110824 (+)
G182037 NA non-coding upstream 19227 73587104 ~ 73587665 (+)
G182124 NA non-coding upstream 32971 73573605 ~ 73573921 (+)
G182020 NA non-coding upstream 192171 73413662 ~ 73414721 (+)
G181965 NA non-coding upstream 239909 73365579 ~ 73366983 (+)
G181994 NA non-coding upstream 266820 73339463 ~ 73340072 (+)
G182154 LOC108230026 non-coding downstream 25390 73635627 ~ 73636093 (+)
G182155 LOC106573487 non-coding downstream 26313 73636550 ~ 73636988 (+)
G182209 NA non-coding downstream 96095 73706332 ~ 73766435 (+)
G181995 NA other upstream 264615 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1353165 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1541697 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2798988 70794530 ~ 70905277 (+)
G182144 NA other downstream 12299 73622536 ~ 73624518 (+)
G183361 NA other downstream 919412 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1101344 74660359 ~ 74732682 (+)
LOC110496116 LOC106561204 other downstream 1275861 74828267 ~ 74890826 (+)
LOC110496136 LOC106561223 other downstream 1427015 74991655 ~ 75145608 (+)

Expression

G182139(LOC106561173) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G182139(LOC106561173) Expression in each Bioproject

Bar chart with 15 bars.
G182139(LOC106561173) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00711849_00714655 CTSH coding CI01000013 null 711496 ~ 715089 (-)