G183119 (LOC106561179)


Basic Information

Item Value
gene id G183119
gene name LOC106561179
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74018173 ~ 74034081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU207744
CTATTAAAGTTTGCAGTTTAACTGATGTTGTTTCTGTATCAACAGACAGTACACTTTTATTTATTAGATTTTCCATTGACATAGATACCGTTTATTGGGACACATATATCCTGTTATTACAGAAGCCCCTCATTCATTCAAGACATTGACCATGTGACTATTCCAGTCTGAGttttatactaaaatggattctATCACAAAGctgttttgttaaaaaaaagaCATTGCATACATTCTTCGGAAGAAGCGCCATTAGTTTACTCTGTTACACTCAAATAAACACAATCTGTGGTGCAAATGTTGGTGCTTCTACAGTATGTCAGTGAATGTTGATACAGGTTTAATCCATAGTGcagtgttttatttattattcACAGCAGACACACGTCACTTTACTATTCATGTGCTGGACAGTTCCTTTGCAGAAGACGTCAGTTTCTTGCAGTCAGAACCACTGACGTCACTAAACTGCCCAAGGCCACCACCAGAGCACCAAGCAGGAACTTCCATGAAATTCCCTGAAACACCAAGTGACGCAATGTCAAAAAACAGTCATGTTTTTTTCCTACTTGTGAACTGAATTCAACTGAAACATTTCACTCAGGGAAAGTTCTCAGTGGCTTACAGGTGGCTTCTTGTTAGGAGTCAGAAATGGGGCAATATTGTCTCCAAGGAGCTGGGCAGGTTTGGCTTGCCACTTCTGGGTGTTTTTGCCTCCTGATTGCCTTTTCACTAGCTTTGACAGCTCAACATGGATGGCCTTGGTGGACGGCTCCAGTTTCAGAGCCTTCTTCAGTATCTCCATGGCCTCCCCGTATTCGCTCTTGTCTGACAGAAGCTTTCCTGTTCTGAAGAGGGCTTTGACATTTTGTGGGTCCAGGGACAAAACATCCCGGCTGGTGTGTAGTGCGTCGTCGTACTGCTCCAGTTTCAGCTGAGCCGCTGCCAGGTTGTTGAGACACTTCACCCGGTAGTCCtgcacctcctccccctccaccagcACAGCATTTCCACCATCTTTAGTGTGTGTAGTAAGGACATCCAGAGCCATCCAGTAGGCCCTGGTAGCCATGCTGTACTCCTCCCTCTGGAAGTGGAAGTTCCCCCGCTCTCGTTTCTGGTTGCCGATGCGTATACGGTCAGACATGGGGAGAATCAGGGGGTCGGGCTTCTCTCTGATGTTCAGGAGTTGTAGCTGGTAGAGTAAGGGGGCCCAGGCTGGAATATCAGGCTCCCTGACaaaaaacaaatacacacacataaacaaacctTCAATCAGACTGGAGCAATGTGGAGAGCCTCAGACAATGGGCATTGTCTAAATATCTTTGATTGTCACACATCCTTGTGTGTAAATATGCTGGGTCAGTGCGTGTAATAGCTCGTATGTTGACTTGCAAACATCACAAAAACATCTGTTCTGAAGTCATTCTCCACGTGCCTTCATTTGCCAATATCACAACTAAGTTTTACATTGTTTTGGTTACATCTTAATTGATTGGACTGCGTATTGATCGGTGACTTCACCTGCAATATATATTAGTAGACACCCAATTACTGCTATCTGGTCAATAGGGAACTGGTACTGTTAAAATGTGTCTTGTCTTGTTGAAAAGTTAATAGTCATGCGCACATCCTTAAACAACTAAGGTGTTTGGCTAATAAAGGATACTTGAAAAAGAAGAGAGCGGTGCGCACACTGAATATGCTCCAGTTTGTCACCTTTAATGGACAACGTTTTGAATTAAAGTCTAATATGTAAGTCAGCATGAGTACTTGGGTTTGTGAACTTGTGAGGGTATTCCAATCCCTCAAAACAGGCAAGAAATGTAATCTGGTCCACCTATGCGTTACAACAGTGAGTTACTGA

Function

NR:

description
peptidyl-prolyl cis-trans isomerase FKBP8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207744 True 1870 lncRNA 0.38 4 74018173 74034081

Neighbor

gene id symbol gene type direction distance location
LOC110495967 LOC106573468 coding upstream 7614 73999269 ~ 74010559 (+)
LOC110495946 LOC106561177 coding upstream 33436 73883551 ~ 73984737 (+)
idh2 LOC100194640 coding upstream 249642 73756972 ~ 73768531 (+)
LOC110495913 ankrd34c coding upstream 280444 73733395 ~ 73737729 (+)
LOC110501876 LOC106561170 coding upstream 439993 73456669 ~ 73580075 (+)
LOC110495989 LOC106573469 coding downstream 35883 74069964 ~ 74110824 (+)
LOC110495996 LOC106561183 coding downstream 92142 74126223 ~ 74139502 (+)
LOC110496029 LOC106561185 coding downstream 144402 74178483 ~ 74198686 (+)
LOC110496053 LOC106561188 coding downstream 176382 74210463 ~ 74221530 (+)
LOC110496089 LOC105018423 coding downstream 485695 74519776 ~ 74529599 (+)
G183117 NA non-coding upstream 1813 74016014 ~ 74016360 (+)
G183108 NA non-coding upstream 2376 74015591 ~ 74015797 (+)
G183101 NA non-coding upstream 20947 73996704 ~ 73997226 (+)
G183100 NA non-coding upstream 22230 73995682 ~ 73995943 (+)
G183099 NA non-coding upstream 22569 73995155 ~ 73995604 (+)
G183152 NA non-coding downstream 26815 74060896 ~ 74129871 (+)
G183168 NA non-coding downstream 107266 74141347 ~ 74141645 (+)
G183175 NA non-coding downstream 121165 74155246 ~ 74155558 (+)
G183176 NA non-coding downstream 121763 74155844 ~ 74156345 (+)
G183177 LOC106561186 non-coding downstream 122541 74156622 ~ 74226257 (+)
G182144 NA other upstream 393655 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 407936 73606892 ~ 73610237 (+)
G181995 NA other upstream 675896 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1764446 72250884 ~ 72253809 (+)
G183361 NA other downstream 495568 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 677500 74660359 ~ 74732682 (+)
LOC110496116 LOC106561204 other downstream 852017 74828267 ~ 74890826 (+)
LOC110496136 LOC106561223 other downstream 1003171 74991655 ~ 75145608 (+)
LOC110496459 LOC106561246 other downstream 2133576 76167573 ~ 76181555 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G160803 NA non-coding NC_035914.1 CM008317.1 26347637 ~ 26349594 (+)