G184488 (LOC106599044)


Basic Information

Item Value
gene id G184488
gene name LOC106599044
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75009104 ~ 75048734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU209291
CCCATGAAAGACAAGACTGGCGACTATAAACATTGTATATGTATAGTTACTATCATTAACCAATTGTTCTAAAAAAAAAGCACAACAGTTATTTTAGAGAAGCCTAACTAATTTGATGAAACATATACTATATACTTACTGTTTCATGTGGCATGGGGTTAAATCCACAGAGGTTGCAGACAGTGTTCTTGcattctgtgcaggtgttgtagTTGGGAGGGTCCTTGGAGCCCTTGTTGAGTTCCACCTTGCAGAGTGGACAGGTAGATTGGCCTGCTTTGGGTGCTGGTTGGGAGGATGCTGTACCCTTTGGAGGAGCTGATGGGGATTTGTCCACTTTGGCATGTACTGATGGGGGGACATTGGCCTTCTGGGGATGCGCTGCTTTCTTCTCCTCTGCTTTCTGAGCAGCAGGTAGTTTGGTCTCCTTTGCAGGGGGCATCTTGGGGGAGGTCTGGGCCAGTGCAGACATCTTGGGGGAAGCTGGCGGTGTGGTGCGGGGCTCGTCCTGAACAACTGATGTTATCAAAGTGGAGGCAGAGCTGAAGATGGACGAGCCAAAGCCAAACATCTTCCCAGACACTGACTCTTCAGGCTTTGAGGAGGCAGACTGAGATTTGGGACCTCCAAAGCCAAATAagcctcctgattcctgcttgggGGGTTGCTTTGTGGCTGGGAAGGCACTACTCTCCCTACGCCCAGGGCTGGGCTGCTGTGGGGGTTTATGAGGTTCTGATGTTCTCCGATTCTCCAGTGGAGCCTTCTGAGCAGGCACTGGGCTTGCCGGATTTTGAGTGTCTGCTGCTGTAGCAGCTTCAACTATTGATATATCAGGCTCTGATTTTGGTGCCTCTGCTGAGGGCTGTCCTTGTTGTTGTAGAGTCTTCTGTTGTGGAGGTTGTTGGACAAGTGTTGGAGTCGGTCTGTCCACTGGCTTCTGGTCCTGCTGGCAAACCACTGTCGGGGATACCTCCTTCTTCTGTGACGAGCCTGCTGCTGGGGTCTCTTTCACTAAAGCAGGAGTCATAGACACCTTGGGGGAAGCTGGAGGTGTGGTGCGGTGCTCATCCTGAACAGCTGAGGTGATCAAAGTGGATGCAGAGCTGAAGATAGAGGAGCCAAAGCCAAGCATCTTCCCAGACACTGAGTCTTCAGGCTTTGACTGAGCAGGCTGAGATTTAGCCCCACCAAAGCCAAAGAagcctcctgactcctgcttgGGGGGCTgggcctgtggtggtggtacagatTTAGCATAAGAGGCTCCACCTTTTGGAAGCTGTTGTTGAGGCTTCCCAGGCTCTCCTTTCGGTGTCCCTGATAGAGGCTGACGTTGTTGCTCGTGTTGTTGTGGAGTCTCTTGGTGTGGAGGGTGTTGGACAGGGGTTGGAGTTGATTTGTCCACTGGCGTTTTGTCCTGCTGTGAAGCCACTGCTGGAGATAATTCCTTCTGTGGTGACCCTGGTGCTgagttcttcttctctttctctgaagCAGGAGTCATTGGCTCATTTAGGGGAGCAGTTTCGAGGTCTGGCTTTGGAGCTTGCTGGGGCTGTACTTGTTGGGATGCCTTTGAAGCAGGCTGTTGCAGTGGAGGAGTTTGCTTTTCTGGCTGCTGTACAGGTGTAGCAGCTCCACTGGTTTTGGGTGTGGCTGTAATTGGTTGGTCCACTGGTTTCTGTACAATTATAGGTTCTTGATTCTCCTTCTCAGCCAGAGCAGGTGAAGCTTGTTTCTTTTGTGAGGATCCTAGTGGTGGGGTCTCCTCCTTTTTGTCTGCATTTGGTGCTGGGGTTCCAGCGGGAAATGGTGTCTCCTGAAGTACAGTGGGTGGAGTGATCTCTTGTTGGCCAGCCGCAGGTACTGGGATCTCCTCCTTCTGGGGTTTAGCTGGAGCTGGAGTCGGCTTTGGAGATGCAGCAGGTGTGACAATCTCCTTTTGAAGTGCAACAGGTGTAGAGACTATGCTGGGCAACGGTTGGGATTTCATCATGGGAGGTCCTGGGGGTTCCACTGCTCCAAGTGCTCTCTGCATCTGGCAGGTCAGACAGAGCCATTCCTTCAC
>TU209289
AATTTGATGAAACATATACTATATACTTACTGTTTCATGTGGCATGGGGTTAAATCCACAGAGGTTGCAGACAGTGTTCTTGcattctgtgcaggtgttgtagTTGGGAGGGTCCTTGGAGCCCTTGTTGAGTTCCACCTTGCAGAGTGGACAGGTAGATTGGCCTGCTTTGGGTGCTGGTTGGGAGGATGCTGTACCCTTTGGAGGAGCTGATGGGGGTTTGTCCACTTTGGCATGTACTGATGGGGGGACATTGGCCTTCTGGGGATGCGCTGCTTTCTTCTCCTCTGCTTTCTGAGCAGCAGGTAGTTTGGTCTCCTTTGCAGGGGGCATCTTGGGGGAGGTCTGGGCCAGTGCAGACATCTTGGGGGAAGCTGGCGGTGTGGTGCGGGGCTCGTCCTGAACAACTGATGTTATCAAAGTGGAGGCAGAGCTGAAGATGGACGAGCCAAAGCCAAACATCTTCCCAGACACTGACTCTTCAGGCTTTGAGGAGGCAGACTGAGATTTGGGACCTCCAAAGCCAAATAagcctcctgattcctgcttgggGGGTTGCTTTGTGGCTGGGAAGGCACTACTCTCCCTACGCCCAGGGCTGGGCTGCTGTGGGGGTTTATGAGGTTCTGATGTTCTCCGATTCTCCAGTGGAGCCTTCTGAGCAGGCACTGGGCTTGCCGGATTTTGAGTGTCTGCTGCAGTAGCAGCTTCAACTATTGATATATCAGGCTCTGATTTTGGTGCCTCTGCTGAGGGCTGTCCTTGTTGTTGTAGAGTCTTCTGTTGTGGAGGTTGTTGGACAAGTGTTGGAGTCGGTCTGTCCACTGGCTTCTGGTCCTGCTGGCAAACCACTGTCGGGGATACCTCCTTCTTCTGTGACGAGCCTGCTGCTGGGGTCTCTTTCACTAAAGCAGGAGTCATAGACACCTTGGGGGAAGCTGGAGGTGTGGTGCGGTGCTCATCCTGAACAGCTGAGGTGATCAAAGTGGATGCAGAGCTGAAGATAGAGGAGCCAAAGCCAAGCATCTTCCCAGACACTGAGTCTTCAGGCTTTGACTGAGCAGGCTGAGATTTAGCCCCACCAAAGCCAAAGAagcctcctgactcctgcttgGGGGGCTgggcctgtggtggtggtacagatTTAGCATAAGAGGCTCCACCTTTTGGAAGCTGTTGTTGAGGCTTCCCAGGCTCTCCTTTCGGTGTCCCTGATAGAGGCTGACGTTGTTGCTCGTGTTGTTGTGGAGTCTCTTGGTGTGGAGGGTGTTGGACAGGGGTTGGAGTTGATTTGTCCACTGGCGTTTTGTCCTGCTGTGAAGCCACTGCTGGAGATAATTCCTTCTGTGGTGACCCTGGTGCTgagttcttcttctctttctctgaagCAGGAGTCATTGGCTCATTTAGGGGAGCAGTTTCGAGGTCTGGCTTTGGAGCTTGCTGGGGCTGTACTTGTTGGGATGCCTTTGAAGCAGGCTGTTGCAGTGGAGGAGTTAGCTTTTCTGGCTGCTGTACAGGTGTAGCAGCTCCACTGGTTTTGGGTGTGGCTGGAATTGGTTGGTCCACTGGTTTCTGTACAATTATAGGTTCTTGATTCTCCTTCTCAGCCAGAGCAGGTGAAGCTTGTTTCTTTTGTGAGGATCCTAGTGGTGGGGTCTCCTCCTTTTTGTCTGCATTTGGTGCTGGGGTTCCAGCGGGAAATGGTGTCTCCTGAAGTACAGTGGGTGGAGTGATCTCTTGTTGGCCAGCCGCAGGTACTGGGATCTCCTCCTTCTGGGGTTTAGCTGGAGCTGGAGTCGGCTTTGGAGATGCAGCAGGTGTGACAATCTCCTTTTGAAGTGCAACAGGTGTAGAGACTATGCTGGGCAACGGTTGGGATTTCATCATGGGAGGTCCTGGGGGTTCCACTGCTCCAAGTGCTCTCTGCATCTGGCAGGTCAGACAGAGCCAT
>TU209285
CATTTGCATATGAAATCACCACAAATACCTTGTAGTGACCTACACTGTTACTGAGTCACAATATCAGGAAACAAGAGATTGAGTAGACTACAGCCTCTCTGACTTCAGACTGGGCACGCAGTCGTTGAATCAATgctgtttccacatcatttcaatgaaatgacattGAACCAACGTGTGATAGATGTTGAATTGAAGTCTATGACCAGTGTGTTATCACAGCACAAGAAAAGGGTACACTATCAAACAATGATGTGCTACAACCTCTGACTCATTTTCATTCAATGTAGGACAATAAAAAACCTATGTTGGAAATCTGAATCTGAATAGTCTGTATCTTATTTGAGCTAAAACCCATTCAAAACAATAAGACCTGTTTTCTCTAGACAAGCAACACAACTAGTCTGAGGATGGATAATACAACAGTTTAGTGAACAAATTGCGATCAACCTTCATCAGTCATTGCCTCTGCTACGTGCCTATGGGGTTAACCTATTCTGAATAATCCTAGAGAAATTACACCTGCTCAACATGGTATTGGGGATTACAGAGAATATGGCATATTCTATGACAGAGTCCTTTTAAACATGCATAGCAAATATGAGAGTCTGCTAAATACACATATAATCAAATGTAATTAACATATTTTGCAGTCTTACCTCTGTTTCATGTGTCATGGGGTTAAATCCACACAGGTTGCAGACAATGTTCTTGcattctgtgcaggtgttgtagTTGGGAAGGTCTTTGGAGCCCTTGTTGAGTTCCACCTTGCAGAGTGGACAGGTAGATTGGCCTGCTTTGGGAGCTGGTTGGGAGGATGCTGCTCCCATTGGAGGTGCTGATTGGGGTTTGTCCATGTTGGCATGTACTGATGGGGGGACATTGGCCTTCTGGGGATGCGCTGCTTTCTTCTCCTCTGCTTTCTGAGCAGCAGGTAGTTTGGTCTCCTTTGCAGGGGGCATCTTGGAGGAGGTCTGGGCCAGTGCAGACATCTTGGGGGAAGCTGGCGGTGTGGTGCGGGGCTCGTCCTGAACAACTGATGTTATCAAAGTGGAGGCAGAGCTGAAGATGGACGAGCCAAAGCCAAACATCTTCCCAGACACTGACTCTTCAGGCTTTGAGGAGGCAGACTGAGATTTGGGACCTCCAAAGCCAAATAagcctcctgattcctgcttgggGGGTTGCTTTGTGGCTGGGAAGGCACTACTCTCCCTACGCCCAGGGCTGGGCTGCTGTGGGGGTTTATGAGGTTCTGATGTTCTCCGATTCTCCAGTGGAGCCTTCTGAGCAGGCACTGGGCTTGCCGGATTTTGAGTGTCTGCTGCTGTAGCAGCTTCAACTATTGATATATCAGGCTCTGATTTTGGTGCCTCTGCTGAGGGCTGTCCTTGTTGTTGTAGAGTCTTCTGTTGTGGAGGTTGTTGGACAAGTGTTGGAGTCGGTCTGTCCACTGGCTTCTGGTCCTGCTGGCAAACCACTGTCGGGGATACCTCCTTCTTCTGTGACGAGCCTGCTGCTGGGGTCTCTTTCACTAAAGCAGGAGTCATAGACACCTTGGGGGAAGCTGGAGGTGTGGTGCGGTGCTCATCCTGAACAGCTGAGGTGATCAAAGTGGATGCAGAGCTGAAGATAGAGGAGCCAAAGCCAAGCATCTTACCAGACACTGAGTCTTCAGGCTTTGACTGAGCAGGCTGAGATTTAGCACCACCAAAGCCAAAGAagcctcctgactcctgcttgGGGGGCTGGGCCTGTGGCGGTGGTACAGATTTTGCATAAGAGGCTCCACCTTTTGGAAGCTGTTGTTGAGGCTTCCCAGGCTCTCCTTTCGGTGTCCCTGATAGAGGCTGACGTTGTTGCTCTTGTTGTTGTGGAGTCTCTTGGTGTGGAGGGTGTTGGACAGGGGTTGGAGTTGATTTGTCCACTGGCGTTTTGTCCTGCTGTGAAGCCACTGCTGGAGATAATTCCTTCTTTGGTGACCCTGGTGCTgggttcttcttctctttctctgaagCAGGAGTCATTGGCTCATTTAGGGGAGCAGTTTCGAGGTCTGGCTTTGGAGCTTGCTGGGGCTGTACTTGTTGGGATGCCTTTGAAGCAGGCTGTTGCAGTGGAGGAGTTTGCTTTTCTGGCTGCTGTACAGGTGTAGCAGCTCCACTGGTTTTGGGTGTGGCTGGAATTGGTTGGTCCACTGGTTTCTGTACAATTATAGGTTCTTGATTCTCCTTCTCAGCCAGAGCAGGTGAAGCTTGTTTCTTTTGTGAGGATCCTAGTGGTGGGGTCTCCTCCTTTTTGTCTGCATTTGGTGCTGGGGTTCCAGCAGGAATTGGTGTCTTCTGAAGTACAGTGGGTGGAGTGATCTCTTGTCGGCCAGCCGCAGGTACTGGGATCTCTTCCTTCTGGGGTTTAGCTGGAGCTGGAGTCGGCTTTGGAGATGCAGCAGGTGTGACAATCTCCTTTTGAAGTGCAACAGGTGTAGAGACTATGCTGGGCAACGGTTGGGATTTCATCATGGGAGGTCCTGGGGGTTCCACTGCTCCGAGTGCTCTCTGCATCTGGCAGGTCAGACAGAGCCAT

Function

NR:

description
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209291 False 2071 lncRNA 0.49 3 75009104 75037526
TU209289 False 1954 lncRNA 0.45 3 75019825 75032517
TU209285 True 2586 lncRNA 0.41 3 75035464 75048734

Neighbor

gene id symbol gene type direction distance location
LOC110496093 LOC106561201 coding downstream 414678 74533285 ~ 74594426 (-)
LOC118937295 NA coding downstream 500999 74501414 ~ 74508105 (-)
LOC110496063 LOC106561200 coding downstream 535788 74452532 ~ 74473316 (-)
LOC110501892 LOC106561189 coding downstream 575882 74241237 ~ 74433222 (-)
LOC110496015 LOC106561186 coding downstream 841754 74157073 ~ 74167350 (-)
LOC110496174 LOC106561210 coding upstream 307837 75356571 ~ 75361242 (-)
LOC110501959 rbm28 coding upstream 530116 75578850 ~ 75582017 (-)
LOC118936395 rbm28 coding upstream 535823 75584557 ~ 75585136 (-)
LOC110496186 LOC106561212 coding upstream 546632 75595366 ~ 75607735 (-)
LOC110496199 LOC106561215 coding upstream 595607 75644341 ~ 75656164 (-)
G184025 NA non-coding downstream 255092 74753727 ~ 74754012 (-)
G183998 NA non-coding downstream 259127 74714130 ~ 74749977 (-)
G184012 NA non-coding downstream 269723 74738695 ~ 74739381 (-)
G183969 NA non-coding downstream 340637 74666945 ~ 74668467 (-)
G184497 NA non-coding upstream 1119 75049853 ~ 75050060 (-)
G184498 NA non-coding upstream 2570 75051304 ~ 75051512 (-)
G184499 NA non-coding upstream 3128 75051862 ~ 75052108 (-)
G184501 NA non-coding upstream 4232 75052966 ~ 75053236 (-)
G184506 NA non-coding upstream 12085 75060819 ~ 75069840 (-)
G184006 LOC106561202 other downstream 276467 74730872 ~ 74732637 (-)
G183538 NA other downstream 898313 74106883 ~ 74110791 (-)
G183096 NA other downstream 1015559 73993078 ~ 73993545 (-)
G182882 NA other downstream 1332681 73676212 ~ 73676423 (-)
G182708 NA other downstream 1663257 73344950 ~ 73345847 (-)
G186002 NA other upstream 828625 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 936425 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 1044436 76093170 ~ 76099909 (-)
G186197 LOC106561241 other upstream 1224790 76273524 ~ 76293392 (-)

Expression


Co-expression Network