XLOC_002133 (gbe1a)


Basic Information

Item Value
gene id XLOC_002133
gene name gbe1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24048663 ~ 24298042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004127
CTAAAAATGCTGAGAGACAACTAAGGCCATGTTTGCTGCCAGTGAAGAAATGTGTTTTATATGAAAGGAGGCCTGTTCCGCTGACTGGATTGCGCAACAGGCCAATGGATTGGTGGCTCCCCGGACTCGCTCTCCACCTCCCTTACGTTATAACTACTAGAGCCCCTTGAGCAAGAGATGCCAGTATATCTCTCATATTAAAATTCAGAGAGCCACAGCAATGGATTCAAGCACTGACGAGACTTTAAATCTCACCGCGTTTCTACAGACAGATCCGTACATTGCACATTATGAGGGAGAGCTGCGTAGAAGatataAGCAGTTTGCAGAGCGTCTGGCACAGTTGGAGGAGGCGGAAGGAACCTTTGATCGCTTCACACTGAGTTACCAGTCATTTGGAATTCAGCGGCGATCCAACAACGGGCTGTTCTTTAGGGAATGGGCACCGGGAGCGAAGGCCGTCTTCCTGACTGGAGATTTCAATTCCTGGGAAAAACAGTCTTACCCTTTCTCGCAGAACGAGCATGGGAAATGGGATCTTTATCTCCCTCCGAAACTGGACACATCTCCTGCCATCGAGCACCTGACCAAACTCAAGCTTGTGGTCCTGACTAAAACTGGCGAATATCTGTTTCGGATCTCTCCCTGGGCcaaatatgtcacaaaaacagtgGATTCTGTCACTTATGACTGGACCCACTGGGACCCTCCACAACCATACCagTTCCAGCACCCCAGACCCCCTCGGCCCAGCAGTCTTCGAATCTACGAGGCTCATGTGGGCATCAGTTCGCCTGAGGAAAAGATTGCCTCGTACAAAAACTTCACCCGAGATGTGCTTCCTCGCATTAAGGATCTCGGATACAACTGTGTCCAGCTCATGGCAATCATGGAACATGCCTACTATGCAAGCTTTGGCTATCAAGTCACCAACTTCTTTGCTGCTTCCAGCCGCTTTGGCACTCCTGATGATCTGAAGCATCTGGTAGATACGGCACACTCCATGGGCATTGCTGTTCTGCTGGATGTGGTCCACAGTCACGCCTCCAGCAACACAGAGGATGGACTCAACTACTTCGATGGGACTGACTCCTGCTTCTTTCATGGAGGCTCCAGAGGCAAACACTCACTCTGGGACAGTCGACTCTTCAATTACTCCAGTTGGGAGGTGTTGCGGTTCCTGCTCTCCAACCTGCGCTGGTGGATGGAGGAATATCGCTTTGACGGCTTCAGGTTTGACGGTGTGACCTCAATGCTCTACCACCATCATGGTATTGACACATCATTTTCGGGGAACTACAGCGAGTACTTTGGCATGCAAGTGGATGAAAACGCACTCATTTACCTAATGCTGGCCAATCACATCCTGCACAGGCTCTACCCACAATGCATCACTGTAGCGGAGGATGTATCAGGGATGCCAGGCCTGTGCAGGGCCATTGAAGAGGGAGGACTGGGCTTTGATTATCGTCTGACCATGGCCGTGCCAGACAAATGGATCCAGGTACTGAAGGAAGTTCGGGATGAGGACTGGgatttgaggaacattgtttacacCCTGATCAACAGAAGAAGGGGGGAGGCTTCTGTCACTTATGCTGAGAGCCATGACCAGGCATTAGTCGGGGACAAGTCGCTGGCATTTTGGCTGATGGACAAAGAGATGTACACCAACATGAGTGCTCTCACTACCATGACGCCTGTTATAGACCGTGGCATCCAGCTGCATAAACTCATCCGTCTGCTCACTCACAGTCTCGGAGGGGAGGGCTACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAATGGCTGGACTTTCCTAGGAAAGGAAACAATGAGAGCTACTATTACGCCCGTCGCCAGTTCAACCTGGTGGACACGGAACATCTGCGATACCGACAACTATACGCTTTCGACCGTGACATGAATCTCACAGAAGACAAATACAGCTGGCTGACTGCCGCTCAGGCTGCAGTCACGACTCTGAATCAAGATGACAAGGTGATTGTATTTGAACGTGCAAACCTGCTGTTTATTTTCAACTTCCATCCCTGCAACAGCTACACGGACTACAGGGTGGCAGCAGAGCATGCTGGGAAATATAAGATCAAATTGAACTCGGACGAGGTGCAGTACGGGGGTCACGGGAGGCTTCTGCAGGACACGGAGTTCTTCACAGAGCCAATGACTTTCAATGGACGAGACCAGTCGTTTCAGATCTACATTCCTTGCAGAACTGCTCTGATCTTGGCAAATGAGGACACTGATTTCAGACACTGAAGACCGTGCGCATGAATGGACATGGATCTTGCATCATATCCCTgaatattgtgcaaccctacatCAGATAACATTCAATATAGCAAacgtttttttttccacatacaATAATGGTACCTGCTTTTAAATATGattacagtacagtatgtttcattctgttaaaaaaaatcatctaaTCTCTTTAAAGAGATACATAAAccaaaattgtttaaattttaaattagcTGTTAATTCACTCAAGAAGTAGGTGACTTTTCTTcaatagagcaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagctaaAGATGTGGTTCTTTGTGATTCATGAAATGCAAACTCAACATGTATCAGGGCTCTGAGGATCAGTAAACATATTcagtcaaaataaaatgaatgcacaTTGCTCCTGACACAAAAAAACAGGTTATATGTAGCACAATAATTGTTCTgtgtattattacaattattccaCAGCCAAGTATTGAAATTGTACATAAAATTTTTAAGGTTTATTTAGATCACATTTCTGGTGCATGGTATGGGCTGGGATAGTCCTCTCATATTGATGAAATGTAAAATGTGAGAAGTTTTAAAGGAGCCCATGCCAGCAATATGAGTAAACATTTTTTGGAGCATGGAATAAAGGTCCTTTTCTGAACTTTGAACATCTCAGAACCATTGCTGTCTTttgaggatgagagagctctaggatttcaccaaaaaaatttttttgtgtgtgaacagGGCTTTGAACGACATGAGGGTaagtaattaaaacaaaatgtttgttgtGGGGTGAACTAACCAATTAAATGGTTATTTCATTTGTAATAAACTATATAGagtcaataataaatataaatgttaaccTCACAATGCATCAAATCCCCTCGTTGAATTTCAGAGGCTTTTACTCCATTTACTTTAACAAGTAAAATCATCACAGAGAATGGGTTACATCCTTTTTCCACTGCAGAGTTACCATGGTTTATACATGTGTTCAGgtatactgtaataaataactAGTAGGTGTGTGCTATATTTATCATCTGTTATCATTTCAGAATTGTTTTAATGATGTGCAAGCTGACATTAACAAGTATGTCACTAActttgcaaacaaaataaaataatgagaaaaatacATATTGAGATTCCATATAGATTTAGCTTAAGCCATTTAGAATGCAGTTAGAatcaatatttcattaaattgaCGACAGCCAAAAATATCACTGTATAGATTTCTGAACTCTTTTCTGAACTCTGAAATAGAATACTGTAAAACAGTAAGGTCATCTCACACAAACAGAGGGGGCAGTTTTCCTGTCTGGGTTCATCAACaggtagttttttttaatattaccagaaccagaatttaaaaaatcttatatatatataaccc
>TCONS_00004126
CTAAAAATGCTGAGAGACAACTAAGGCCATGTTTGCTGCCAGTGAAGAAATGTGTTTTATATGAAAGGAGGCCTGTTCCGCTGACTGGATTGCGCAACAGGCCAATGGATTGGTGGCTCCCCGGACTCGCTCTCCACCTCCCTTACGTTATAACTACTAGAGCCCCTTGAGCAAGAGATGCCAGTATATCTCTCATATTAAAATTCAGAGAGCCACAGCAATGGATTCAAGCACTGACGAGACTTTAAATCTCACCGCGTTTCTACAGACAGATCCGTACATTGCACATTATGAGGGAGAGCTGCGTAGAAGatataAGCAGTTTGCAGAGCGTCTGGCACAGTTGGAGGAGGCGGAAGGAACCTTTGATCGCTTCACACTGAGTTACCAGTCATTTGGAATTCAGCGGCGATCCAACAACGGGCTGTTCTTTAGGGAATGGGCACCGGGAGCGAAGGCCGTCTTCCTGACTGGAGATTTCAATTCCTGGGAAAAACAGTCTTACCCTTTCTCGCAGAACGAGCATGGGAAATGGGATCTTTATCTCCCTCCGAAACTGGACACATCTCCTGCCATCGAGCACCTGACCAAACTCAAGCTTGTGGTCCTGACTAAAACTGGCGAATATCTGTTTCGGATCTCTCCCTGGGCcaaatatgtcacaaaaacagtgGATTCTGTCACTTATGACTGGACCCACTGGGACCCTCCACAACCATACCagTTCCAGCACCCCAGACCCCCTCGGCCCAGCAGTCTTCGAATCTACGAGGCTCATGTGGGCATCAGTTCGCCTGAGGAAAAGATTGCCTCGTACAAAAACTTCACCCGAGATGTGCTTCCTCGCATTAAGGATCTCGGATACAACTGTGTCCAGCTCATGGCAATCATGGAACATGCCTACTATGCAAGCTTTGGCTATCAAGTCACCAACTTCTTTGCTGCTTCCAGCCGCTTTGGCACTCCTGATGATCTGAAGCATCTGGTAGATACGGCACACTCCATGGGCATTGCTGTTCTGCTGGATGTGGTCCACAGTCACGCCTCCAGCAACACAGAGGATGGACTCAACTACTTCGATGGGACTGACTCCTGCTTCTTTCATGGAGGCTCCAGAGGCAAACACTCACTCTGGGACAGTCGACTCTTCAATTACTCCAGTTGGGAGGTGTTGCGGTTCCTGCTCTCCAACCTGCGCTGGTGGATGGAGGAATATCGCTTTGACGGCTTCAGGTTTGACGGTGTGACCTCAATGCTCTACCACCATCATGGTATTGACACATCATTTTCGGGGAACTACAGCGAGTACTTTGGCATGCAAGTGGATGAAAACGCACTCATTTACCTAATGCTGGCCAATCACATCCTGCACAGGCTCTACCCACAATGCATCACTGTAGCGGAGGTACTGAAGGAAGTTCGGGATGAGGACTGGgatttgaggaacattgtttacacCCTGATCAACAGAAGAAGGGGGGAGGCTTCTGTCACTTATGCTGAGAGCCATGACCAGGCATTAGTCGGGGACAAGTCGCTGGCATTTTGGCTGATGGACAAAGAGATGTACACCAACATGAGTGCTCTCACTACCATGACGCCTGTTATAGACCGTGGCATCCAGCTGCATAAACTCATCCGTCTGCTCACTCACAGTCTCGGAGGGGAGGGCTACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAATGGCTGGACTTTCCTAGGAAAGGAAACAATGAGAGCTACTATTACGCCCGTCGCCAGTTCAACCTGGTGGACACGGAACATCTGCGATACCGACAACTATACGCTTTCGACCGTGACATGAATCTCACAGAAGACAAATACAGCTGGCTGACTGCCGCTCAGGCTGCAGTCACGACTCTGAATCAAGATGACAAGGTGATTGTATTTGAACGTGCAAACCTGCTGTTTATTTTCAACTTCCATCCCTGCAACAGCTACACGGACTACAGGGTGGCAGCAGAGCATGCTGGGAAATATAAGATCAAATTGAACTCGGACGAGGTGCAGTACGGGGGTCACGGGAGGCTTCTGCAGGACACGGAGTTCTTCACAGAGCCAATGACTTTCAATGGACGAGACCAGTCGTTTCAGATCTACATTCCTTGCAGAACTGCTCTGATCTTGGCAAATGAGGACACTGATTTCAGACACTGAAGACCGTGCGCATGAATGGACATGGATCTTGCATCATATCCCTgaatattgtgcaaccctacatCAGATAACATTCAATATAGCAAacgtttttttttccacatacaATAATGGTACCTGCTTTTAAATATGattacagtacagtatgtttcattctgttaaaaaaaatcatctaaTCTCTTTAAAGAGATACATAAAccaaaattgtttaaattttaaattagcTGTTAATTCACTCAAGAAGTAGGTGACTTTTCTTcaatagagcaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagctaaAGATGTGGTTCTTTGTGATTCATGAAATGCAAACTCAACATGTATCAGGGCTCTGAGGATCAGTAAACATATTcagtcaaaataaaatgaatgcacaTTGCTCCTGACACAAAAAAACAGGTTATATGTAGCACAATAATTGTTCTgtgtattattacaattattccaCAGCCAAGTATTGAAATTGTACATAAAATTTTTAAGGTTTATTTAGATCACATTTCTGGTGCATGGTATGGGCTGGGATAGTCCTCTCATATTGATGAAATGTAAAATGTGAGAAGTTTTAAAGGAGCCCATGCCAGCAATATGAGTAAACATTTTTTGGAGCATGGAATAAAGGTCCTTTTCTGAACTTTGAACATCTCAGAACCATTGCTGTCTTttgaggatgagagagctctaggatttcaccaaaaaaatttttttgtgtgtgaacagGGCTTTGAACGACATGAGGGTaagtaattaaaacaaaatgtttgttgtGGGGTGAACTAACCAATTAAATGGTTATTTCATTTGTAATAAACTATATAGagtcaataataaatataaatgttaaccTCACAATGCATCAAATCCCCTCGTTGAATTTCAGAGGCTTTTACTCCATTTACTTTAACAAGTAAAATCATCACAGAGAATGGGTTACATCCTTTTTCCACTGCAGAGTTACCATGGTTTATACATGTGTTCAGgtatactgtaataaataactAGTAGGTGTGTGCTATATTTATCATCTGTTATCATTTCAGAATTGTTTTAATGATGTGCAAGCTGACATTAACAAGTATGTCACTAActttgcaaacaaaataaaataatgagaaaaatacATATTGAGATTCCATATAGATTTAGCTTAAGCCATTTAGAATGCAGTTAGAatcaatatttcattaaattgaCGACAGCCAAAAATATCACTGTATAGATTTCTGAACTCTTTTCTGAACTCTGAAATAGAATACTGTAAAACAGTAAGGTCATCTCACACAAACAGAGGGGGCAGTTTTCCTGTCTGGGTTCATCAACaggtagttttttttaatattaccagaaccagaatttaaaaaatcttatatatatataaccc
>TCONS_00004128
ATGGATTCAAGCACTGACGAGACTTTAAATCTCACCGCGTTTCTACAGACAGATCCGTACATTGCACATTATGAGGGAGAGCTGCGTAGAAGatataAGCAGTTTGCAGAGCGTCTGGCACAGTTGGAGGAGGCGGAAGGAACCTTTGATCGCTTCACACTGAGTTACCAGTCATTTGGAATTCAGCGGCGATCCAACAACGGGCTGTTCTTTAGGGAATGGGCACCGGGAGCGAAGGCCGTCTTCCTGACTGGAGATTTCAGTAAGCATTCCCACAATCCTTCTTACCCTTTCTCGCAGAACGAGCATGGGAAATGGGATCTTTATCTCCCTCCGAAACTGGACACATCTCCTGCCATCGAGCACCTGACCAAACTCAAGCTTGTGGTCCTGACTAAAACTGGCGAATATCTGTTTCGGATCTCTCCCTGGGCcaaatatgtcacaaaaacagtgGATTCTGTCACTTATGACTGGACCCACTGGGACCCTCCACAACCATACCagTTCCAGCACCCCAGACCCCCTCGGCCCAGCAGTCTTCGAATCTACGAGGCTCATGTGGGCATCAGTTCGCCTGAGGAAAAGATTGCCTCGTACAAAAACTTCACCCGAGATGTGCTTCCTCGCATTAAGGATCTCGGATACAACTGTGTCCAGCTCATGGCAATCATGGAACATGCCTACTATGCAAGCTTTGGCTATCAAGTCACCAACTTCTTTGCTGCTTCCAGCCGCTTTGGCACTCCTGATGATCTGAAGCATCTGGTAGATACGGCACACTCCATGGGCATTGCTGTTCTGCTGGATGTGGTCCACAGTCACGCCTCCAGCAACACAGAGGATGGACTCAACTACTTCGATGGGACTGACTCCTGCTTCTTTCATGGAGGCTCCAGAGGCAAACACTCACTCTGGGACAGTCGACTCTTCAATTACTCCAGTTGGGAGGTGTTGCGGTTCCTGCTCTCCAACCTGCGCTGGTGGATGGAGGAATATCGCTTTGACGGCTTCAGGTTTGACGGTGTGACCTCAATGCTCTACCACCATCATGGTATTGACACATCATTTTCGGGGAACTACAGCGAGTACTTTGGCATGCAAGTGGATGAAAACGCACTCATTTACCTAATGCTGGCCAATCACATCCTGCACAGGCTCTACCCACAATGCATCACTGTAGCGGAGGATGTATCAGGGATGCCAGGCCTGTGCAGGGCCATTGAAGAGGGAGGACTGGGCTTTGATTATCGTCTGACCATGGCCGTGCCAGACAAATGGATCCAGGTACTGAAGGAAGTTCGGGATGAGGACTGGgatttgaggaacattgtttacacCCTGATCAACAGAAGAAGGGGGGAGGCTTCTGTCACTTATGCTGAGAGCCATGACCAGGCATTAGTCGGGGACAAGTCGCTGGCATTTTGGCTGATGGACAAAGAGATGTACACCAACATGAGTGCTCTCACTACCATGACGCCTGTTATAGACCGTGGCATCCAGCTGCATAAACTCATCCGTCTGCTCACTCACAGTCTCGGAGGGGAGGGCTACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAATGGCTGGACTTTCCTAGGAAAGGAAACAATGAGAGCTACTATTACGCCCGTCGCCAGTTCAACCTGGTGGACACGGAACATCTGCGATACCGACAACTATACGCTTTCGACCGTGACATGAATCTCACAGAAGACAAATACAGCTGGCTGACTGCCGCTCAGGCTGCAGTCACGACTCTGAATCAAGATGACAAGGTGATTGTATTTGAACGTGCAAACCTGCTGTTTATTTTCAACTTCCATCCCTGCAACAGCTACACGGACTACAGGGTGGCAGCAGAGCATGCTGGGAAATATAAGATCAAATTGAACTCGGACGAGGTGCAGTACGGGGGTCACGGGAGGCTTCTGCAGGACACGGAGTTCTTCACAGAGCCAATGACTTTCAATGGACGAGACCAGTCGTTTCAGATCTACATTCCTTGCAGAACTGCTCTGATCTTGGCAAATGAGGACACTGATTTCAGACACTGA

Function

symbol description
gbe1a Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0003844 1,4-alpha-glucan branching enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-171 Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

Ensembl:

ensembl_id ENSDARG00000029051

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004127 False 3737 mRNA 0.43 16 24048663 24298042
TCONS_00004126 False 3638 mRNA 0.43 15 24048663 24298042
TCONS_00004128 True 2067 mRNA 0.51 16 24048883 24296589

Neighbor

gene id symbol gene type direction distance location
XLOC_002132 NA coding upstream 55746 23983307 ~ 23992917 (+)
XLOC_002131 NA coding upstream 457605 23588675 ~ 23591058 (+)
XLOC_002130 CR847844.2 coding upstream 489119 23553533 ~ 23559544 (+)
XLOC_002129 zmp:0000001103 coding upstream 497707 23548674 ~ 23550956 (+)
XLOC_002128 NA coding upstream 504597 23542617 ~ 23544066 (+)
XLOC_002136 NA coding downstream 18811 24316853 ~ 24375160 (+)
XLOC_002137 CU467963.3 coding downstream 55708 24353750 ~ 24353866 (+)
XLOC_002138 CT573163.1 coding downstream 99056 24397098 ~ 24398671 (+)
XLOC_002139 NA coding downstream 106648 24404690 ~ 24412025 (+)
XLOC_002140 paxbp1 coding downstream 123975 24422017 ~ 24493323 (+)
XLOC_002122 CT827808.1 non-coding upstream 630716 23417833 ~ 23417947 (+)
XLOC_002119 NA non-coding upstream 1009373 23034329 ~ 23039290 (+)
XLOC_002144 NA non-coding downstream 352821 24650863 ~ 24655184 (+)

Expression


Co-expression Network