G185205


Basic Information

Item Value
gene id G185205
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75843761 ~ 75845575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU210090
AATACTTTATAAGTGTGTCGGTGCACAGGTGCTCAATAGTGTAACACATCTCCAAGAAGGACAGGTGAGCCAGActcagagctagggttagggtgataATATGTTAGGGTTTTAGAACATGCTAAAATGTCTACTATGATTCCTGCTTATTTTCCACTAAACCATCTAATGCTTACGTTAGCGCGATCATAGCCACAGTATAACTCTAACTATGATAATTTAGTGATGTCATCTCTGTGTATGTTTCCATGGTAACTGTTCTGCCTGTTCTGTCTCCCGTGGTAACAGTGGGTTCTGTTGCGCCCATAGttgggaaaaaataaataaaatgattgTCCAAGTTAAATACAATTTCCTCCCCTCTGTATAAATACACACATCAGCACTGTGTCCGTTATTTCTATGTTAAATCTATAAATCACCTATATACACATATCCATTATTCTTCTGTACTCCAAAAATATGGTGCGATACTTAGAGGACAGCCTCAGTGGGTCACCGCGTGTCACAGccctcagagagaggggaaggaagagatGTTACACCAATCAGTAATAATAATCAAACATATGTAATACTCTGACAAATATCTTACTTCGTAagtccttctctgtgtgtgtgtgtgtgtgtatatactggtTGTGTATATACATCCCTGTGGGACAAGCAGTCCAGTGAAGAGTAGAATCATGTGAGAATGAATAAAGAATGGGTATAGATTCACAACGTGAGACTAAATATTCAACAGGACTAATAAGCTAGAATGTTAGAACATGATCAATTAATAAGATTCAACATTAATGTTTTTATGAACTAATCATATGAACATCATTAATAAGATTAAAAGTTGACAAGTAGCAGATCAAATAAGATTGTCGTCAGTACTGGTGTTTACCTGAGTGTGAGGCTTGGACCCATGAAACAAAACCTCAGAGATGATTACAATGGTATTCACACACGCCCGCATacaagcgcgcgcacacacacacacacacacacacacatacacacacacacacacacacacacacacacactgtcacacactatCACACCCCGATAccttcacatgcacacacactcccacacagatATAGAAGTCAGACACTATAAACCAGGACTCAGGAGAAACAGTCTTCCCTCCCTGCTGCTCTGACAGACTCACTTCTTCAGGATCAAAAGTAGTTTTAGCATCTCATTATCATCTTATAACACAAAACACAGAGTGCCAAGGAGGAAAGCTAAAACCCTAGGTGAGAGTTGATGATGTGATGGAGGTGATACAGTtgacgtcggaagtttacattcacttaggttggagttattaaaacttgtttttcaaccactccacaaatctcttgttaacaaactatagttttggcaagttggttaggacatctactttgtgcatgacacaagtcatttttccaacaattgtttatagaagGATTATTtcgcttataattcactgtatcacaattccagtgggtcagaagttcacactaagttgactatgcctttaagcagcttggaaaattccagaaaatgatgtcatggcttcagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctgagaaaaacaattgtaaacctccacaagtctggttcatccttgggagcaatttccaaacgccggaaggtaccactttcatctgtacaaacaataatatgcaagtataaacaccatg
>TU210091
AATACTTTATAAGTGTGTCGGTGCACAGGTGCTCAATAGTGTAACACATCTCCAAGAAGGACAGGTGAGCCAGActcagagctagggttagggtgataATATGTTAGGGTTTTAGAACATGCTAAAATGTCTACTATGATTCCTGCTTATTTTCCACTAAACCATCTAATGCTTACGTTAGCGCGATCATAGCCACAGTATAACTCTAACTATGATAATTTAGTGATGTCATCTCTGTGTATGTTTCCATGGTAACTGTTCTGCCTGTTCTGTCTCCCGTGGTAACAGTGGGTTCTGTTGCGCCCAT

Function

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210090 False 1815 lncRNA 0.39 1 75843761 75845575
TU210091 True 307 lncRNA 0.63 1 75843761 75844067

Neighbor

gene id symbol gene type direction distance location
ptprq LOC106561260 coding upstream 1215 75798506 ~ 75842546 (+)
LOC118942030 LOC106561226 coding upstream 12289 75829380 ~ 75831472 (+)
otogl LOC106573511 coding upstream 46019 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding upstream 106266 75736814 ~ 75737495 (+)
LOC110496246 LOC106561218 coding upstream 113543 75726061 ~ 75730218 (+)
LOC110496295 LOC106561258 coding downstream 48614 75894189 ~ 75902042 (+)
LOC110496313 fkbp4 coding downstream 70062 75915637 ~ 75935997 (+)
LOC110496319 b4galnt3 coding downstream 94194 75939769 ~ 75982606 (+)
c2cd5 LOC106561251 coding downstream 148307 75993882 ~ 76053143 (+)
lmf2a lmf2 coding downstream 208407 76053982 ~ 76066679 (+)
G185204 NA non-coding upstream 360 75842626 ~ 75843401 (+)
G185186 NA non-coding upstream 62609 75773766 ~ 75781152 (+)
gcsha LOC106561216 non-coding upstream 182119 75656179 ~ 75661643 (+)
G185211 NA non-coding downstream 10554 75856129 ~ 75856857 (+)
G185228 NA non-coding downstream 138475 75984050 ~ 75984401 (+)
G185326 NA non-coding downstream 258548 76104123 ~ 76104424 (+)
G185352 ppp6r2 non-coding downstream 304960 76150535 ~ 76150879 (+)
G185367 NA non-coding downstream 342000 76187575 ~ 76187870 (+)
LOC110496136 LOC106561223 other upstream 756354 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 957261 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1129647 74660359 ~ 74732682 (+)
G183361 NA other upstream 1308735 74529649 ~ 74535026 (+)
G182144 NA other upstream 2219243 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 322082 76167573 ~ 76181555 (+)
G185462 chkb other downstream 588242 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 688803 76534378 ~ 76606975 (+)
G185718 NA other downstream 984838 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1302078 76863449 ~ 77160850 (+)

Expression


Co-expression Network