G185461


Basic Information

Item Value
gene id G185461
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76416215 ~ 76418354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU210391
CAAGCATGTTTATTTGCAGTTCAGTTATACTTACACAGCAGCTGCATTGCAGGGAGAATATCAATAACACCAAAGGGTTTTGGACAGGATTGATGTGCAATGAAAAGAAAGTTACTTAATTTAGCTAGTTGACGAGACACTGGCTTCTAGACTAGGCAGCTTCATATTCTCGGAAATCGAACATTGGCCTACATCCACAACATATATTCTAACATTATACAAAAGGGTAACCTCACAGGTCCACCTTTATTAGAACTCACATCAAAACAAAGAGCACTTCACTGGGCAAATAAATAACAAATTATACTGAAAAACATTTCCATGTGTTCAAATGATTgccattggagaaaaaaaaaaacaaccatgATCCCATTTTCAAAATCTTTGGATCTGAATTCCAAAAGCATGCAGATATTCCATTTGGTTTTAATAATGTTAGGCAGGCAGACACGCACAGGAGCCAAATGCACATTTAAATAAGATACAACATCTGTTGTTGAAAGTCATGGACAGCTTTCTTTAACCATTGTGGTTCTTGGTCAGAAATGGAAAAGGACAAAACATCCAAACCTTGGGCAGAGTCAAACCGTGACAGACAGTTCTATACCAGTTTACTAGTAATGGAACAGCTTTAGAATGAATGGTAAACCTAGTCAGAATGCAATGACATCAAAGCCAGACaaaagctatatatatatatattttcataaaCTGCTCTCTTCTGAGAGGTTGTGCAATAAGCTGTTATTGTCTATaaccaaaaaaataataattttttaatCATTTAGTTTCAGGTCTACATTTGCTAATTTATCATTCAAAGTGTAAAATGACCCTCATTGTTGTGAAGAGGTAGAATGACACAAAACACTTGTGCCAGGAGGTGAAATGCGACACCTCCTGGCAgccatgTTGCTAAGTGATTTCTGACAACTGCAACCCCTCTATATATAGTTTGACTAGAGAAAATGCTAAAACAGACAGGTCATACATGGGTTTTAAGCCCAATTCAATCAGAACCAGTCATGGAGAAAGGTCAAAAACAACATCCTGTTTAAGAACATATTTGACTTACTATGCAATGGAGCATGTTCTTTTCTTACTAGTTCTGAATTAATAGGGCCAAGAGTCCAGATTTCCCTACTGCACTACAAAGAAACAGAACTACAGTATGAACAGAGTTGTGCTATGCAGCTTGATTCTCTGCCATGCTGTACTGTGTCCATGCATAGAACAGGCATTTAACAAACAAGTCAAGGAAAAAGAAAAAAGACGGCACAAAATGAGCATATTTCGACCCTGAAATCAAGGGTGTTCTGAAGTTCAACAATTACATTACGAGGTGGGGTAAAGAAAGAAGCAGAGTTGAATGACTAAAATAAAGCACATGACTACAGGGTTTGAAACATAAAATGTATGGAACCAGTAGATCATAACTAATGTAAACAAATAACATGCTTTTTTTTGCTGTGCATTTTCACAGAATTTCACATTTCATAGTAGGGGAAGATAAGTGCATTTTGTTGGAGTGCAGCTGAGTCCCTGCTTCACTGTTACTTGTCTCAGTCAGAGCAACGTATTGGATGCTACTAGATGGATGGGGTCCTGGTATATTAGAAACATCAAGTTCAAACAATAGATCATTTTGTAAAAATCCACCCAAGACTCTTCAGTGGGCGTTTACCCCTCATATTTGGTTTGGTTTCAACACTTAACAGATATGCCTAGCTAACTACGTTTCTGCATCAGGACAGTTGCGTACAGGAAGAATCAGCAGATATAAAAATGACAGTACATTCCATTGAAGTCAATCTGTTCTTTTAGCGATTTAGGAAAATAACTTTTTCTGCTTGAAGTAGGCATCAAATCGTGACTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210391 True 1877 lncRNA 0.37 2 76416215 76418354

Neighbor

gene id symbol gene type direction distance location
LOC110496527 sephs1 coding upstream 17677 76389529 ~ 76398538 (+)
cd9a LOC106561241 coding upstream 122804 76273512 ~ 76293411 (+)
LOC110496485 LOC106561242 coding upstream 144052 76266403 ~ 76272163 (+)
LOC110496459 LOC106561246 coding upstream 234660 76167573 ~ 76181555 (+)
lmf2a lmf2 coding upstream 349536 76053982 ~ 76066679 (+)
LOC100135907 LOC100135907 coding downstream 113065 76531419 ~ 76537667 (+)
mapk8ip2 arsa coding downstream 120322 76538676 ~ 76714965 (+)
LOC110502025 LOC106573403 coding downstream 445095 76863449 ~ 77160850 (+)
LOC110496661 LOC106561266 coding downstream 876733 77295087 ~ 77387938 (+)
nfat5a LOC106561332 coding downstream 1278872 77697226 ~ 77716788 (+)
G185463 NA non-coding upstream 15450 76354349 ~ 76400765 (+)
G185459 NA non-coding upstream 62908 76353089 ~ 76353307 (+)
G185457 NA non-coding upstream 64853 76351029 ~ 76351362 (+)
G185450 NA non-coding upstream 71810 76343992 ~ 76344405 (+)
G185431 NA non-coding upstream 105622 76308954 ~ 76310593 (+)
G185624 arsa non-coding downstream 262254 76680608 ~ 76681061 (+)
G185717 NA non-coding downstream 409795 76828149 ~ 76833657 (+)
G185783 NA non-coding downstream 509564 76927918 ~ 76932510 (+)
G185695 NA non-coding downstream 743661 77162015 ~ 77165608 (+)
LOC110496136 LOC106561223 other upstream 1328808 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1529715 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1702101 74660359 ~ 74732682 (+)
G183361 NA other upstream 1881189 74529649 ~ 74535026 (+)
G185462 chkb other downstream 15463 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 116024 76534378 ~ 76606975 (+)
G185718 NA other downstream 412059 76830413 ~ 76832500 (+)
LOC110496763 dynlrb2 other downstream 1358773 77777066 ~ 77780795 (+)

Expression


Co-expression Network