G185549 (LOC106561235)


Basic Information

Item Value
gene id G185549
gene name LOC106561235
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76534378 ~ 76606975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU210492
ttttttttttTGCACTTCAATAGTTTATTCAGTCTACATGGAAGCTAAACAAACACCAAATACATCCAGTCTTGAGATGATATGCATTTAAGTGTCCAAAATCATATTTTCATATTTCACTGTGTTTCTGTAAGTCATTTACTTTTTCACTCAGCATCATGATGCAATCAGCAACATGGCTGAACCTGTGTTCACATCCGATGTTGTCTGGGAACTAGGAGGTTGTCGTTGCAATGCCAGAGTAGAAAGGAAACAACCTTACAGCTCAACTGAATATATTAGCAGATGTCATCTAACAAAGACCACAGCTTTAACCCAATGATGTCGATGCTTGCTTTAACCACACTGGACCAAAGCCAAACTGACCCACAGTGGTTGCCATGGGTAATATGTGTATTATAAATGAGCAGAGTGGTTGCCATGGGTAATATGTGTTCTAAAATAACCAGAGTGGTTGTTATGAGTGATTCAGAATAGTTTCCATTGGTGATTGATGTTCTAGAATGGCCAGAGGTGGAATAGATTCTGTGTGAGGTTTGGGGTGGTAGACTTATAAGAACGGTCGGTGTCTGCGTTGGTTTGCGGTCATGGTCATGTTGGTCAGGTTTAGGCTACGGTGGCAAAGCCCACTTGGTTGTTTGTGCGGTCGTAGACGGAGTAGTACTGCATGAGGAATACATCTCCCAAAATCCACAGGGGCTGTCCGTTCTGGGACGGCAGGTAGGTGGGGGTGGAATAGATTCTGTGTGAGGTTTGGGGTGGTAGACTTCTAAGAACGGTCGGTGTCTGTGTTGGGTTTGCGGTCATGGTCATGTTGGTCAGATTTAGGCTGCGGTGGCAAAGCCCACTTGGTTGTTTGTGCGGTCGTAGACGGAGTAGTACTCCCTGAGGAATACATCTCCCAAAATCCACAGGGGCTGTCCGTTCTGGGACGGCAGGTAGGTGGGGATGATCCCCACGAAGCAGAACTGGTACCCACCCTGGTTGCTGCTGAATGTATGCAGATGGCGGCAGGGGGAAGTTGACTCCATTGATGGTGAAGGTGAGAGTAGGCAGGCTGTTGATCTGGTTACAGTTCACTGTGTACTGCATCAACAAACAATTCACAGACATGAGTGACACAAAACATCCCTGTACTGGTTTACTCTGGTCTGCACTGGTTTCCCCAACTTCTACTTTTTGGATTACACTGTTTTATGGTGTCAGTTAGTACTGGTCTGTTATGGTTTATAATGGTTTCCTGCTACCTGTCCATACTGGTCCTGCTGGGCTCCAATGGACTGCATCAGCGTTCCCATGATCTGTTTGGGTGCAGTCAGCATGGAGGTGCCTGTATCCACGATGGCCTGGCAGCCCTGCCCACACCACCCTGTCTCCTGACCGTTGATCTGGAATCTGGAGATGTacaagggttagtgttagacagacaggcaggcagacaggcaggcaggcaggcagacaggcagacaggcagacaggcaggcaggcaggcaggcagacaagcaACTCCTAAAGGAGTTTTTCACCCTAGCTTTTGCAGGCTCTTAGTGGTTCTGATGTCAGTGTATGGTTAAGTGTGTTTAGTTGGTGTGGTTGATCCTGACCCTTGGATGCCGATCTGCCAGTATGTCTGGGCGGTGACGGGGGTCCAGTAGATCTGACCCTGATACTTGGTGTTGTCCACTTCTCCGAACGACAGCTCACTGCCCTGCTGGCCGTCCTGGTCAGGTAGAATGCAAATATGTTAGCCTTTAGAAGGTTCAGTGACATGATGTTGTCCATGAAGGGAGTCTCTTGTCCGGCTGAGATGGAAGGGTAGGACATGCCAAGGATACCATCAAACTGGGCCACAACAAAGGTCTGACCTGGCTCGTCAGTACTCAGACCAATCTCCTGGTGGTTGATGAAAATACCACCGACCTAAAGAGGTGACAAACAACACACTCACTCAGCATCATGGAAACACTGGTTTTATTAGAATGGAAGTACATGTACATGGCTGTATCTGTTGTGGCTTTTTATTGCATGTAGTGAAGAATAACTGTGGTAGAAGTAGTTAAGTATTTGTAAGGTTGTTATGGTGGGACTCACGTTGACGGTGTCATATCCGAAGACTCCACTGAGACTGCCAGTTCCGTAGGGCAGGTAGAAAGTTTCCCCATTAGCTGAGTAGGTGGACGACTGCTGGGGGTTGAACTTTGTGTGGCTGT

Function

NR:

description
gastricsin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210492 True 2210 TUCP 0.39 6 76534378 76606975

Neighbor

gene id symbol gene type direction distance location
LOC110496527 sephs1 coding upstream 135840 76389529 ~ 76398538 (+)
cd9a LOC106561241 coding upstream 240967 76273512 ~ 76293411 (+)
LOC110496485 LOC106561242 coding upstream 262215 76266403 ~ 76272163 (+)
LOC110496459 LOC106561246 coding upstream 352823 76167573 ~ 76181555 (+)
lmf2a lmf2 coding upstream 467699 76053982 ~ 76066679 (+)
LOC110502025 LOC106573403 coding downstream 256474 76863449 ~ 77160850 (+)
LOC110496661 LOC106561266 coding downstream 688112 77295087 ~ 77387938 (+)
nfat5a LOC106561332 coding downstream 1090251 77697226 ~ 77716788 (+)
LOC110496763 dynlrb2 coding downstream 1170091 77777066 ~ 77780795 (+)
LOC110502056 LOC106561330 coding downstream 1231793 77838768 ~ 77882208 (+)
G185461 NA non-coding upstream 116024 76416215 ~ 76418354 (+)
G185463 NA non-coding upstream 133613 76354349 ~ 76400765 (+)
G185459 NA non-coding upstream 181071 76353089 ~ 76353307 (+)
G185457 NA non-coding upstream 183016 76351029 ~ 76351362 (+)
G185450 NA non-coding upstream 189973 76343992 ~ 76344405 (+)
mapk8ip2 arsa non-coding downstream 66931 76538676 ~ 76714965 (+)
G185624 arsa non-coding downstream 73633 76680608 ~ 76681061 (+)
G185717 NA non-coding downstream 221174 76828149 ~ 76833657 (+)
G185783 NA non-coding downstream 320943 76927918 ~ 76932510 (+)
G185695 NA non-coding downstream 555040 77162015 ~ 77165608 (+)
G185462 chkb other upstream 99763 76433817 ~ 76434615 (+)
LOC110496136 LOC106561223 other upstream 1446971 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1647878 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1820264 74660359 ~ 74732682 (+)
G185718 NA other downstream 223438 76830413 ~ 76832500 (+)
LOC110502077 LOC106561326 other downstream 1440912 78047373 ~ 78066844 (+)
G187260 NA other downstream 1530538 78137513 ~ 78177583 (+)

Expression


Co-expression Network