G185624 (arsa)


Basic Information

Item Value
gene id G185624
gene name arsa
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76680608 ~ 76681061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU210585
GGGGTagtagaggaagaagagatgaCTACATGGGAGGGGTagtagaggaagaagagatgaTTACATGGGAGGGGTagtagaggaagaagagatgattacATGAGAGGGGTAGTAGAGGAAGAAGGGTTGTTTCTTCCTGGTAGACTGGGTGATGAAGTCTGTGGCAAAGTCACTGTAAGCCCTCTCCAGATCCAGGAAGTCCACAGGCTGCTGCTTTATGACATCATTGTGCATTAGTGGGATGGTTACCACGCCGACGTCACAGTTTCCGAAGCATTTAACATCTGGAGGGAAACATGTCAGATTCTGACAGG

Function

symbol description
arsa Predicted to enable arylsulfatase activity. Human ortholog(s) of this gene implicated in metachromatic leukodystrophy. Orthologous to human ARSA (arylsulfatase A).

NR:

description
arylsulfatase A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210585 True 314 lncRNA 0.48 2 76680608 76681061

Neighbor

gene id symbol gene type direction distance location
mapk8ip2 arsa coding upstream 6535 76538676 ~ 76714965 (+)
LOC100135907 LOC100135907 coding upstream 142941 76531419 ~ 76537667 (+)
LOC110496527 sephs1 coding upstream 282070 76389529 ~ 76398538 (+)
cd9a LOC106561241 coding upstream 387197 76273512 ~ 76293411 (+)
LOC110496485 LOC106561242 coding upstream 408445 76266403 ~ 76272163 (+)
LOC110502025 LOC106573403 coding downstream 182388 76863449 ~ 77160850 (+)
LOC110496661 LOC106561266 coding downstream 614026 77295087 ~ 77387938 (+)
nfat5a LOC106561332 coding downstream 1016165 77697226 ~ 77716788 (+)
LOC110496763 dynlrb2 coding downstream 1096005 77777066 ~ 77780795 (+)
LOC110502056 LOC106561330 coding downstream 1157707 77838768 ~ 77882208 (+)
G185461 NA non-coding upstream 262254 76416215 ~ 76418354 (+)
G185463 NA non-coding upstream 279843 76354349 ~ 76400765 (+)
G185459 NA non-coding upstream 327301 76353089 ~ 76353307 (+)
G185457 NA non-coding upstream 329246 76351029 ~ 76351362 (+)
G185450 NA non-coding upstream 336203 76343992 ~ 76344405 (+)
G185717 NA non-coding downstream 147088 76828149 ~ 76833657 (+)
G185783 NA non-coding downstream 246857 76927918 ~ 76932510 (+)
G185695 NA non-coding downstream 480954 77162015 ~ 77165608 (+)
G185915 NA non-coding downstream 484714 77165775 ~ 77165991 (+)
G185916 NA non-coding downstream 485050 77166111 ~ 77167067 (+)
G185549 LOC106561235 other upstream 73633 76534378 ~ 76606975 (+)
G185462 chkb other upstream 245993 76433817 ~ 76434615 (+)
LOC110496459 LOC106561246 other upstream 511313 76167573 ~ 76181555 (+)
LOC110496136 LOC106561223 other upstream 1593201 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1794108 74828267 ~ 74890826 (+)
G185718 NA other downstream 149352 76830413 ~ 76832500 (+)
LOC110502077 LOC106561326 other downstream 1366826 78047373 ~ 78066844 (+)
G187260 NA other downstream 1456452 78137513 ~ 78177583 (+)

Expression


Co-expression Network