G186869


Basic Information

Item Value
gene id G186869
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77475010 ~ 77477871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU211940
ctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattatctctctctcattctgtctctgtatattctctctctctgtctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatatactctctatttctctctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatattttctctatttctccctctgtatattatctctctctttctccgaaaattctctttctctgtatattctctctctctgtatattctctctctctttctctctctctctgtatattctcattctttctctctgtctcagtatattctcactctctttctctctgtctctgtatattctcactctctttctctgtatattctcactctatttctctctgtctctgtatattctcactctttttctctgtatattctcactctatttctctctgtctctgtatattcTCACTCTTTTTCTGTATATTCTCACCCTCTCTGTAtattctcattctctttctctatattctctctctctctctctctctctgtatattctcattctctttctctgtatattatcactctctttctctctctctgtatattctcactctttctctctctgtatattctcactctctctctcgctctctctgttctctcactctctctctttatattctcactctttctctcactctcgttctctctccctctgtatattctcactctctctctctctctctctgtatattctcactctctctttctccacctgccCTCTCTGTTTGATGGATGGAGGTACAGTATATTTCTATTTGACAGGTTGAGGGATGGTTAGTCAGGGGATTCTACTGTGGTGCTCTTGTCCTCTTCCTAAATCACTGAT
>TU211941
ctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattatctctctctcattctgtctctgtatattctctctctctgtctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatatactctctatttctctctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatattttctctatttctccctctgtatattatctctctctttctccgaaaattctctttctctgtatattctctctctctgtatattctctctctctttctctctctctctgtatattctcattctttctctctgtctcagtatattctcactctctttctctctctctgtaaattctcactctctttctgtatattctcactctctttctgtatATTCTCACGCTCTCTGTatattctcactctctttctctatattctcactctctctgtctgtatattctcattctctttctctgtctctctgtatattaccactctctctctctctctctgttctcccactcactctctgtatattctcactctctttctctgtctctgtatattctcactctctttctgtatATTCTCACACTCTCTGTatattctcactctctttctctgtctctgtatattctcactctctttctgtatATTCTCACGCTCTCTGTATATTCTCACGTTCTCTGTatattctcactctctttctctgtatattctcactctttctctcactctccctctctgtatattctcactctctttctctgtatattctcactctctctcactctccctctgtatattctcattccctttctctctgtatattctcactctttctctcactctgcctctctgtatattctcattctctttctctctgtatattctcactctttctctcactctccctctctgtatattctcattctctttctctctgtatattctcactctttctctgactctccctct

Function

NR:

description
PREDICTED: uncharacterized protein LOC105418166

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211940 False 1296 lncRNA 0.38 3 77475010 77477871
TU211941 True 1385 lncRNA 0.36 2 77475010 77476567

Neighbor

gene id symbol gene type direction distance location
LOC110496661 LOC106561266 coding upstream 168544 77295087 ~ 77387938 (+)
LOC110502025 LOC106573403 coding upstream 315166 76863449 ~ 77160850 (+)
mapk8ip2 arsa coding upstream 800937 76538676 ~ 76714965 (+)
LOC100135907 LOC100135907 coding upstream 937343 76531419 ~ 76537667 (+)
LOC110496527 sephs1 coding upstream 1076472 76389529 ~ 76398538 (+)
nfat5a LOC106561332 coding downstream 219355 77697226 ~ 77716788 (+)
LOC110496763 dynlrb2 coding downstream 299195 77777066 ~ 77780795 (+)
LOC110502056 LOC106561330 coding downstream 360897 77838768 ~ 77882208 (+)
LOC100135906 LOC100135906 coding downstream 485630 77963501 ~ 77969044 (+)
fbxl13 fbxl13 coding downstream 493973 77971844 ~ 78003571 (+)
G186837 NA non-coding upstream 63256 77410376 ~ 77411754 (+)
G186835 NA non-coding upstream 66755 77406802 ~ 77408255 (+)
G186826 NA non-coding upstream 80728 77389713 ~ 77394282 (+)
G186824 NA non-coding upstream 90420 77383776 ~ 77384590 (+)
G186896 NA non-coding downstream 27541 77505412 ~ 77537308 (+)
G186938 NA non-coding downstream 78615 77556486 ~ 77556772 (+)
G186942 NA non-coding downstream 82166 77560037 ~ 77560947 (+)
G186953 NA non-coding downstream 115190 77593061 ~ 77594366 (+)
G186964 NA non-coding downstream 129063 77606934 ~ 77607503 (+)
G185718 NA other upstream 642510 76830413 ~ 76832500 (+)
G185549 LOC106561235 other upstream 868035 76534378 ~ 76606975 (+)
G185462 chkb other upstream 1040395 76433817 ~ 76434615 (+)
LOC110496459 LOC106561246 other upstream 1305715 76167573 ~ 76181555 (+)
LOC110502077 LOC106561326 other downstream 570016 78047373 ~ 78066844 (+)
G187260 NA other downstream 659642 78137513 ~ 78177583 (+)
G187320 LOC106561323 other downstream 789418 78267289 ~ 78270045 (+)
LOC110496993 LOC106561317 other downstream 1006953 78467699 ~ 78519071 (+)

Expression


Co-expression Network