G188067 (LOC106561319)


Basic Information

Item Value
gene id G188067
gene name LOC106561319
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78349980 ~ 78353910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU213299
CAACTTTTTTTTAATAATAGCTCAAAATAGAATTTAATACATCTCAATCCTACTTGAAAGAGAAGTGGCACACTGGGTAGGAAAACAAGTTAATGTTATGTAAAGGCAGTAGGATAGAAGAATAACGCAAGGTGACAGGAAGCCGATGGAATAGGCGGAGTGAGAAAGGGCTGGTCACATTAACCACTTAGATTTACAAAACCTCAAAGAAGGCAGGGATAGGCTACAATAAAATGACACTGTTTGGAAAAGGCCTGTCCCCTTGTGTAAGTGAAGAATACTTCTCTCCTGTAATAGTCAATTTATTTTCTCTATGGCAAGTACCACAGTTTGAGTGTCCTCTTTATACAAACTCAAACAATGTCAATGTGTAGGCGTATGCATACAgtgcactcggaaagtattcagaccccttcacatttTGTGGAAAATGTCCGCATCAGTCTATacataatactccataatgacaaaccaaaaacagacACTTTTGATAATAtattctatataaggtcccacagttgacagtgcacgtcagagcaaaaaccaagccatgaggttgaaggaattgtccgtagaactctgagacaggattgtgtcaaggcacagatctgcggaagggtaccaaaacatttctgtcattcttaaagggaagaagtttggaaccaccaagactccagagttcctctgcagAGATGGgataaacttccagaaggacaaccatctctgcagcactccacaaatcaggccttaatggtggCCAGACCAAAGTCACTCCTCAGTAtaaggaacatgacagcctgcttggagtttgccaaaaggcacctaaaggactctcaggccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttgagtagagtgtccttgagtagcccagccagagcccggacttgaaaccccatcgaatatctctggagagaaaatagctgagcagcaactctccccatccaacccgacagagcctgagagaatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgattacagactcgaggctgtaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtcatatttcagttgttttttttaatacatttttaaaactttctaaaaacctgtttttgttttgccattatggagtattgtgtgtagattgattagagaaaaaaaatgtttcatcaattttagaacaaggctgtaacataacaaaatgtgaaaaaagtcaaggggtcttaatactttccaaatttactgtatatataaaatatatacatatctGACTGTACAACACTGTCGTATGTACTGCCACTGTGTCATATATCCTATTTACAGGCCCCAATGCTCCCAACCACTCCCACAAGCATCTCCAGATTCAGCCCTAACATGTCCCAACTGCGGCAGGACATGTGCCTCCTGGATTGGGCTTCACAACCACCTACAACCGCACCCCCGCCAAGAGTGGTATCCATATCTATCCTATAAATCATCCCTGGAAGCGATGTTATCTTTGGAAACGATGTACTGcaagtatgtgtgtatgttattATGTGTATAATATCATTCATTATTTATATAGCTAGGCTTTACTCATATGTGTGCTGCTCCTCATGCTTGTTGTCTTGACCCTTGCCCTCATGTGACCTCCTTTCCCTCAAAACCCTCTTCTTTAATCCCTATCCTCTACCCTCCAACATCTGTTGCCTCAACCCCTTCCCTGGCCCCTGCACCCCTACAGTCACACTGTGAGTGTCGGCCCCCAGTGTGTTCTCAGCCACACAGGTGTACAGACCCGAATCCCGGGATGTCACCATGACGATCTCCAATGTTCCCTCTGGCAGGAGCCGGtaggcaggggaggagaggagggggggagaggaaggggtgaggcTGGAAAAGAGGACAGAGGCATTACCAGATGCTGGGCTGGGTAAGTGGGAATGGTAAGAGGAGTAGTTGGATGTCTGGCTGGATGCAGGCTTGGAGTTGAGGCTGGAGATAGGCTTGGAGTAGGGTCTGGATGCAGGCTTGGAGAAGGGTCTGGATGCAGGCTtggaaaagggtctgaatgcagGTTTGGAGTTGAGGCTGGATCCAGGTTTGGAGTAGGGTCTGGATGCAGGCTTGTGGCTGTGGGTGTTGTTGGATGATCCCAGTCTCTGTCCAGAAGGAGTGACCCAGTAGATTGTGGGCTGAGGCTCTGCCAGGGCGCGACAGTGCAGGGCcagcctctccccctctcgcacCCCCACGTAGGGGGGGAGGATGCCAGGGGGGATGAGGGGGAGGCAGGAGGCTGACATCTCTGTGATTGACACCTCCCTCACCCTGCGAGCCCTCAGCTCTGGAGGCTCAGAACACAATGTGGCCTGGGGCTGGATAAACCTCACAGCCTGTggcatctgtgtatctgtgtgtgcgtCAGCATCTGTGTGAGGGTGCTCCTCAGCCACCCAGCGAAACAGGCAGTCACAGCGGAGGGGGTTGGAGTGCAGGCTGACCTCCCTTAGTCTGGGCAGAGACAGGACAGTGTGTTGGTGCAGAGCAGTCAGAGCGTTGGAGTTCAGCATCAGGCTCTCGAGCCTGCCCAGCTGGAAGAAGGCCTGGGGGTGGATGTAGGACAGCCGGGGGTTGTTGGTGATCTCCAGCTTGGTGAGCTCAGGCAGGTTCTCCATGGCTGCCCTCTCGATGGCCACCAGCTCCTCCATGTTGTTCAgacccagctctgtcaggtggaccaGGTCCCTGAAGTCCCCTGTCTGAACCAGACTCAGACGGTTCTTATTCAGGTCCAGGAACTTCAGGGAGGACCTCCACTGGGTTTCCCCCCAGCATCAGCACCTGGAGGCAGGGCAGGGTGGTGAACCAGAGGGGGTCAATTGAGGTCAGGTGGTTGTTGTTGAGGTGCAGGCGCAGCAGGGAGCCCAAGCCAGAGAAGGCTCTAGGAGCCAGGGAGGCCAGCTGGTTGTGGCTGAGGAAGAGCTCCTGTAGTGCAGGCAGGGAAGAGAAGGCGGCAGGGGGCAGGGACCGGAGCTGGTTCTCCTCCATGTGCAAGGAGAGTAGGGAGCGCAGGGAGGGAGTCTGGGGCTGGGTTGAGGTTAGTGTCCTAACACTGCTGAAGCGGTTCTGAGACAGATCCAGCTCTGTGAGGTTGGGGAGTGTCTGTAACAGTGGTGTCTCCAAGGCAGACAGCAAGTTACTCTGcagacagagggtgtgtgtgtctagggggagaggggtggggagctggGTCAGGAACAGGTTGTTACAGTCCACAGTTGGAACCTCGCAGGAGAATGACTGGGGGGAAAACCAGGGCttgatctgacacacacaccctgccggGCAGGAGACGCTCCATGGCAGGGAATGGACCACTAgtgcactggacacacacacccacacacacaggaccagctGCCTCTGCAGTAGGACCATTGACACCCTCAGCATCCTCACTGCAGAGAGGAGTTGATTCAGAGGAGTCGATTCAGTGGTGGCAATTCGATTGAGGTAACTCAGTGTTGTTGCCAAGTTACAGCGCTGTAGGTATCTGCTGTTGCCAGGTTACAGTGCCATAGGAATCTAAAGTGTTGTGGACTGTCTAGGTGATGGTCTCCGTGGTCAGACGGTCGCTGTCACATTGTGACGAC

Function

NR:

description
leucine-rich repeat neuronal protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213299 True 3717 lncRNA 0.50 3 78349980 78353910

Neighbor

gene id symbol gene type direction distance location
LOC110496911 LOC106561320 coding downstream 8404 78301573 ~ 78344271 (-)
LOC110496900 LOC106561323 coding downstream 79760 78267071 ~ 78270220 (-)
LOC110496855 LOC106561324 coding downstream 131364 78151133 ~ 78218616 (-)
LOC118942057 NA coding downstream 207512 78129577 ~ 78142468 (-)
LOC110496836 LOC100286559 coding downstream 246704 78079493 ~ 78103276 (-)
LOC110496976 hras coding upstream 12206 78366116 ~ 78393964 (-)
LOC110497044 irf7b coding upstream 207068 78560978 ~ 78565956 (-)
LOC110497066 LOC106561314 coding upstream 356988 78710898 ~ 78853465 (-)
LOC110497088 trim44 coding upstream 572541 78926451 ~ 78998262 (-)
LOC110497116 fjx1 coding upstream 693522 79047432 ~ 79049962 (-)
G187880 NA non-coding downstream 53744 78295820 ~ 78296236 (-)
G187809 NA non-coding downstream 152707 78138268 ~ 78197273 (-)
G187767 NA non-coding downstream 273594 78076139 ~ 78076386 (-)
LOC110496818 tmm60 non-coding downstream 277850 78071317 ~ 78079168 (-)
G188108 NA non-coding upstream 17949 78371859 ~ 78372265 (-)
G188210 NA non-coding upstream 180610 78534520 ~ 78534808 (-)
G188238 LOC106561315 non-coding upstream 224507 78578417 ~ 78580141 (-)
G188240 NA non-coding upstream 230510 78584420 ~ 78585120 (-)
G188283 LOC105030512 non-coding upstream 280685 78634595 ~ 78634833 (-)
G187579 LOC106561332 other downstream 646491 77702899 ~ 77703489 (-)
G187490 NA other downstream 878883 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 1178341 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 2026090 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 2056588 76273524 ~ 76293392 (-)
G188257 NA other upstream 262672 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 869320 79223230 ~ 79224998 (-)
G189256 NA other upstream 1011939 79365849 ~ 79366569 (-)
G189806 NA other upstream 1406129 79760039 ~ 79760627 (-)
G190857 NA other upstream 2198217 80552127 ~ 80552484 (-)

Expression


Co-expression Network