G188238 (LOC106561315)


Basic Information

Item Value
gene id G188238
gene name LOC106561315
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78578417 ~ 78580141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU213499
TGCATACATTGATAAAGGTCTCCATCCCACATAAAACCCTTCAATCTTTCACAGGAAGCTGTAGAGGTCTATTGCTGACCAATGGCTTGACACAGACATACTTGCCAATTTAACTGTCCACTGGTCCAGTCATGGCTATCTCATGCGCACTCACGGTCAGCAAAGTGGCAGTGTTCATTATTGCAGAACTTTGTTTAGTTTATCTCAATTAACAAAAAAATAAGTATTTATAGGCTATTGAACAAATAAGAATTTCAATTTCAGACAATGGGCACCAAAGTACATCTtcgatacaatcttcccagcagATGCAGGCAGTTAAAATAGGCCGTTTTGCTCTCATGTGAAACGGCCAATCACAGCAAAGTACTTGGGAGCCACAACCATGCACTTCCGCTGAAATACTGTGCAGTCTCCACAGCTGCTGTTTCATTCACTAATTCCTCGTATTCAAAGTCATCCATAAAGACGTAATTCCACGCGTCACCGAAGTGCAGTCTTTCGTCCTTCGACGCTTTGTCCATGAGTGCGCGAACAGTCTCTCTACCCTGTAATTCCGAAGGGAACCCAAGCGCAGTTCGACTCTCTTGTCTCTTGTAGCATAGCAACCGTAACTCTGAGTTACTTTCCCCTCTCATTGCCTTGTACCTGCAGACGCTGCCTGGCgatgggagagagcgagaaagtcGGTGCCAAGAGTGTGTCCATGGGTGTCTCGCCTGCAGAGTGAATCAAATAACTTGTCATTCTTTTCAACTTTGAGTCCCTTTTGATTGAATACGCCCCTGTTTATACACGGGTGGTAACGACAATTAGGCGACCTGGGTGTGTCTCAGTATCTGTCGAACCAGGTGGTAAAGTCCAGCAGCTCCTGCTCCTCGGAGCTCAGGGGCTCATAGCTCCCCTCATCGGAGGAACAGGTGGAGTGGGGTGACTCCGGCTCGGCCGAGTAGCTGTTGGAGATGGTAGGGGAAGGCACCCCGCACTGGAAGGCGGCAGACACTGCATCATGCTCGTCTAGTAGCTGCTGCAGGGCTCGGATATATTCCACCGCGGACCGTAGCGTCTCCACTTTGCTCATCTTCTTGTTGGCTGCCCCGTTGGGCACGTGCTGACGCAGCGTCTGGAAGCCCATGTTGACTTGTTTGACCCGGTTCCTCTCGCGCTCGTTCCGCCGGGCCACGGCTACGGGCAGCTGCTGGGGGATGGAGTAGCCTAGTCCGTTAAAGCTGAGCCGCCGCTTGCAGCGCAGGAGCTCCGGAGAGCTGGAGCGCTGTCTTTTCAGCACCGTGGTCTTGCTTTGGTAGCCGGCTGCAATGGTGTCATTGGGGAGAGCGCACTCCTGGGCTGGGGCGTGCAAGGTAATGGTGGTGCGCCTCTCCATCAGTCCAAATGTGTATGCGTTCTGCGCCATTTgcgtggtggtgatggtggtagtctCCATGTTGGTTGGTGGTGAGACAGGGCTACTGACAGAGGTGGGTTGCAACAGCGCAGCCTCACAGAAAGACACTCCGTGGAAGAAGAGATTTAAAAAATAGACAGAGGTTTGCAGAGCACTGCTCTCGTGTCCTTCGCGTGGGAGCCGTGTGGCTATAGCTGGAGCGCGCTGTGACTATTTGGTGTCCAAGTCTTTCTTGACTGCGCTTGCTTACTTCAAGAGCCGATCTGACCCAAACTTTGG
>TU213500
AAAATCTGAGTCATATGAGTCTACGAGAAACGGAGAGCAAGTGCATACATTGATAAAGGTCTCCATCCCACATAAAACCCTTCAATCTTTCACAGGAAGCTGTAGAGGTCTATTGCTGACCAATGGCTTGACACAGACATACTTGCCAATTTAACTGTCCACTGGTCCAGTCATGGCTATCTCATGCGCACTCACGGTCAGCAAAGTGGCAGTGTTCATTATTGCAGAACTTTGTTTAGTTTATCTCAATTAACAAAAAAATAAGTATTTATAGGCTATTGAACAAATAAGAATTTCAATTTCAGACAATGGGCACCAAAGTACATCTtcgatacaatcttcccagcagATGCAGGCAGTTAAAATAGGCCGTTTTGCTCTCATGTGAAACGGCCAATCACAGCAAAGTACTTGGGAGCCACAACCATGCACTTCCGCTGAAATACTGTGCAGTCTCCACAGCTGCTGTTTCATTCACTAATTCCTCGTATTCAAAGTCATCCATAAAGACGTAATTCCACGCGTCACCGAAGTGCAGTCTTTCGTCCTTCGACGCTTTGTCCATGAGTGCGCGAACAGTCTCTCTACCCTGTAATTCCGAAGGGAACCCAAGCGCAGTTCGACTCTCTTGTCTCTTGTAGCATAGCAACCGTAACTCTGAGTTACTTTCCCCTCTCATTGCCTTGTACCTGCAGACGCTGCCTGGCgatgggagagagcgagaaagtcGGTGCCAAGAGTGTGTCCATGGGTGTCTCGCCTGCAGAGTGAATCAAATAACTTGTCATTCTTTTCAACTTTGAGTCCCTTTTGATTGAATACGCCCCTGTTTATACACGGGTGGTAACGACAATTAGGCGACCTGGGTGTGTCTCAGTATCTGTCGAACCAGGTGGTAAAGTCCAGCAGCTCCTGCTCCTCGGAGCTCAGGGGCTCATAGCTCCCCTCATCGGAGGAACAGGTGGAGTGGGGTGACTCCGGCTCGGCCGAGTAGCTGTTGGAGATGGTAGGGGAAGGCACCCCGCACTGGAAGGCGGCAGACACTGCATCATGCTCGTCTAGTAGCTGCTGCAGGGCTCGGATATATTCCACCGCGGACCGTAGCGTCTCCACTTTGCTCATCTTCTTGTTGGCTGCCCCGTTGGGCACGTGCTGACGCAGCGTCTGGAAGCCCATGTTGACTTGTTTGACCCGGTTCCTCTCGCGCTCGTTCCGCCGGGCCACGGCTACGGGCAGCTGCTGGGGGATGGAGTAGCCTAGTCCGTTAAAGCTGAGCCGCCGCTTGCAGCGCAGGAGCTCCGGAGAGCTGGAGCGCTGTCTTTTCAGCACCGTGGTCTTGCTTTGGTAGCCGGCTGCAATGGTGTCATTGGGGAGAGCGCACTCCTGGGCTGGGGCGTGCAAGGTAATGGTGGTGCGCCTCTCCATCAGTCCAAATGTGTATGCGTTCTGCGCCATTTgcgtggtggtgatggtggtagtctCCATGTTGGTTGGTGGTGAGACAGGGCTACTGACAGAGGTGGGTTGCAACAGCGCAGCCTCACAGAAAGACACTCCGTGGAAGAAGAGATTTAAAAAATAGACAGAGGTTTGCAGAGCACTGCTCTCGTGTCCTTCGCGTGGGAGCCGTGTGGCTATAGCTGGAGCGCGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213499 False 1684 lncRNA 0.52 1 78578417 78580100
TU213500 True 1652 lncRNA 0.52 1 78578490 78580141

Neighbor

gene id symbol gene type direction distance location
LOC110497044 irf7b coding downstream 12461 78560978 ~ 78565956 (-)
LOC110496976 hras coding downstream 184453 78366116 ~ 78393964 (-)
LOC110496911 LOC106561320 coding downstream 236841 78301573 ~ 78344271 (-)
LOC110496900 LOC106561323 coding downstream 308197 78267071 ~ 78270220 (-)
LOC110496855 LOC106561324 coding downstream 359801 78151133 ~ 78218616 (-)
LOC110497066 LOC106561314 coding upstream 130757 78710898 ~ 78853465 (-)
LOC110497088 trim44 coding upstream 346310 78926451 ~ 78998262 (-)
LOC110497116 fjx1 coding upstream 467291 79047432 ~ 79049962 (-)
LOC110502122 LOC106561308 coding upstream 663471 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 724175 79304316 ~ 79350048 (-)
G188210 NA non-coding downstream 43609 78534520 ~ 78534808 (-)
G188108 NA non-coding downstream 206152 78371859 ~ 78372265 (-)
G188067 LOC106561319 non-coding downstream 224507 78349980 ~ 78353910 (-)
G187880 NA non-coding downstream 282181 78295820 ~ 78296236 (-)
G188240 NA non-coding upstream 4279 78584420 ~ 78585120 (-)
G188283 LOC105030512 non-coding upstream 54454 78634595 ~ 78634833 (-)
G188295 NA non-coding upstream 63110 78643251 ~ 78643460 (-)
G188308 NA non-coding upstream 70281 78650422 ~ 78651149 (-)
G188338 NA non-coding upstream 90919 78671060 ~ 78671268 (-)
G187579 LOC106561332 other downstream 874928 77702899 ~ 77703489 (-)
G187490 NA other downstream 1107320 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 1406778 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 2254527 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 2285025 76273524 ~ 76293392 (-)
G188257 NA other upstream 36441 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 643089 79223230 ~ 79224998 (-)
G189256 NA other upstream 785708 79365849 ~ 79366569 (-)
G189806 NA other upstream 1179898 79760039 ~ 79760627 (-)
G190857 NA other upstream 1971986 80552127 ~ 80552484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034048 ascl1b coding NC_007118.7 CM002891.2 49715750 ~ 49717195 (+)
grasscarp (Ctenopharyngodon idella) CI01000345_02086990_02087869 ASCL1, ASCL1B coding CI01000345 null 2086423 ~ 2087978 (-)