G188339


Basic Information

Item Value
gene id G188339
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78671345 ~ 78671646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU213605
gagttcctctgtggagattggagaaccttccagaaggacaaacatctctgcagcactccaccaatcaggcctttatgatagagtggccagacggaagccactcctcagtaaaaggcacatgacaacccacttgTTGTTTACCAAAAGGCAACCTGAAGGActctccgaccatgagaaacaagattgaactctttggcctgaatgccaagcatcacatctggtggaaacctggcatacggtgaagcatggtgatggcggcatcatgctgtggggatagtCAGAATTAagtgaaagatgaacag

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213605 True 302 lncRNA 0.45 1 78671345 78671646

Neighbor

gene id symbol gene type direction distance location
LOC110497055 LOC106561315 coding upstream 91155 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 114077 78537027 ~ 78557268 (+)
LOC110496993 LOC106561317 coding upstream 152274 78467699 ~ 78519071 (+)
lrrc56 lrrc56 coding upstream 219782 78394108 ~ 78451563 (+)
LOC110496927 LOC106561319 coding upstream 318700 78348080 ~ 78352645 (+)
LOC118944149 NA coding downstream 259777 78931423 ~ 78931476 (+)
LOC110497132 pamr1 coding downstream 431928 79103574 ~ 79151359 (+)
LOC110497158 LOC106573351 coding downstream 505382 79177028 ~ 79235909 (+)
LOC110497165 lrrc4c coding downstream 1245276 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 2052714 80724360 ~ 80727535 (+)
G188328 NA non-coding upstream 4817 78666298 ~ 78666528 (+)
G188313 NA non-coding upstream 17988 78653151 ~ 78653357 (+)
G188312 NA non-coding upstream 18702 78652440 ~ 78652643 (+)
G188296 NA non-coding upstream 26203 78644795 ~ 78645142 (+)
G188293 NA non-coding upstream 29180 78641874 ~ 78642165 (+)
G188369 NA non-coding downstream 21247 78692893 ~ 78693158 (+)
G188374 NA non-coding downstream 33059 78704705 ~ 78704989 (+)
G188376 NA non-coding downstream 39400 78711046 ~ 78711829 (+)
G188384 NA non-coding downstream 56028 78727674 ~ 78730495 (+)
G188577 NA non-coding downstream 192092 78863738 ~ 78863975 (+)
G187320 LOC106561323 other upstream 401300 78267289 ~ 78270045 (+)
G187260 NA other upstream 493762 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 622545 78047373 ~ 78066844 (+)
G191052 NA other downstream 2083495 80755141 ~ 80756647 (+)
G191057 accs other downstream 2093686 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 2393908 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 2412182 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3694639 82366183 ~ 82393779 (+)

Expression


Co-expression Network