G188577


Basic Information

Item Value
gene id G188577
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78863738 ~ 78863975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU213865
gcgTACTGCAGGTCAGCCACCTGGGGGAGACTTGTCGAGGCCTGGTAACAGACGGAGAAAACATCACGAGGTgatctgctggacgtgccaggtcttGACGGGATCTCCTGCCAGGACTCATTGGGGCTGATTGGGGATTGGTGAGTAATCAAgtgctgattgctcaccagctgtacaAGTCCCATAAAactgccagaagggcagcacacagggGAGAGACTAGGGGAGGAAAGGACTC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU213865 True 238 lncRNA 0.54 1 78863738 78863975

Neighbor

gene id symbol gene type direction distance location
LOC110497055 LOC106561315 coding upstream 283548 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 306470 78537027 ~ 78557268 (+)
LOC110496993 LOC106561317 coding upstream 344667 78467699 ~ 78519071 (+)
lrrc56 lrrc56 coding upstream 412175 78394108 ~ 78451563 (+)
LOC110496927 LOC106561319 coding upstream 511093 78348080 ~ 78352645 (+)
LOC118944149 NA coding downstream 67448 78931423 ~ 78931476 (+)
LOC110497132 pamr1 coding downstream 239599 79103574 ~ 79151359 (+)
LOC110497158 LOC106573351 coding downstream 313053 79177028 ~ 79235909 (+)
LOC110497165 lrrc4c coding downstream 1052947 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 1860385 80724360 ~ 80727535 (+)
G188384 NA non-coding upstream 133243 78727674 ~ 78730495 (+)
G188376 NA non-coding upstream 151909 78711046 ~ 78711829 (+)
G188374 NA non-coding upstream 158749 78704705 ~ 78704989 (+)
G188369 NA non-coding upstream 170580 78692893 ~ 78693158 (+)
G188339 NA non-coding upstream 192092 78671345 ~ 78671646 (+)
G188721 NA non-coding downstream 137119 79001094 ~ 79006319 (+)
G188745 NA non-coding downstream 180179 79044154 ~ 79044383 (+)
G188888 NA non-coding downstream 233690 79097665 ~ 79097880 (+)
G188890 NA non-coding downstream 237425 79101400 ~ 79101723 (+)
G188945 NA non-coding downstream 311231 79175206 ~ 79175428 (+)
G187320 LOC106561323 other upstream 593693 78267289 ~ 78270045 (+)
G187260 NA other upstream 686155 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 814938 78047373 ~ 78066844 (+)
G191052 NA other downstream 1891166 80755141 ~ 80756647 (+)
G191057 accs other downstream 1901357 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 2201579 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 2219853 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3502310 82366183 ~ 82393779 (+)

Expression


Co-expression Network