G188622


Basic Information

Item Value
gene id G188622
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78875987 ~ 78877756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU213915
gagggggtggggggttaaCAACTCACACCCTGTTGTATATCAAGGAGAGAAGATTCAGGTCTCACTCTTCAAATTCACCAGAGGAATGTTCCATTGTTTCAAGAGACTTCCTGCCGAAACTCTAACACGTTCAAAAGCAAaaactggaacaatatttctaaaatAGAATGTGGGGAATGGTTAAAGGCGATATATAGAACACTAATGtaattttgtttgttattttgtgatgtcattaaaaatgttataaaggaaatagtgtaacttggaaagtataccAACTACATGTATGAAGTGTCCATCCTATACCATGTGCATGTAATATGAAACATTATGAAAGAGattttgttaagagagggatgtgatttgaGAAACAATAAGagatatttgtttttttataacTGTGCACAGTAAGTAAGCCACCACCCCAGTGAGGTCAGAAAGTGTGTCAGCCTCCCAGAACCACCCCTTCCCTGCAAACTGTATAAATGATGGGTAAGAAATAATCATAGCACCAGAAAAGCGTGAAGATGCAGCTGCAATTTTAAAGTGGTCTGAACTTTGAATCTCAACACGAGGTAGAGACGGTTGTAACGGTTctctggtggtgaaggagaggcggaccaaaatgcagcgtggtttctttgattcatgtttaataacaaaaaaagataaacacgaacactacaaaacaataaacgtggaaaaccaaaaacagccctatctggtgcaaaacacagagacaggaacaatcacccacaaacacacagtgaaacccaggctacctaagtatgattctcaatcagagacaacacctgcctctgattgagaaccatactaggccgaaacatagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213915 True 856 lncRNA 0.39 2 78875987 78877756

Neighbor

gene id symbol gene type direction distance location
LOC110497066 LOC106561314 coding downstream 22522 78710898 ~ 78853465 (-)
LOC110497044 irf7b coding downstream 310031 78560978 ~ 78565956 (-)
LOC110496976 hras coding downstream 482023 78366116 ~ 78393964 (-)
LOC110496911 LOC106561320 coding downstream 534411 78301573 ~ 78344271 (-)
LOC110496900 LOC106561323 coding downstream 605767 78267071 ~ 78270220 (-)
LOC110497088 trim44 coding upstream 48695 78926451 ~ 78998262 (-)
LOC110497116 fjx1 coding upstream 169676 79047432 ~ 79049962 (-)
LOC110502122 LOC106561308 coding upstream 365856 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 426560 79304316 ~ 79350048 (-)
ehf ehf coding upstream 508527 79386283 ~ 79393989 (-)
G188489 NA non-coding downstream 89079 78729602 ~ 78786908 (-)
G188475 NA non-coding downstream 173820 78701945 ~ 78702167 (-)
G188370 NA non-coding downstream 182826 78692533 ~ 78693161 (-)
G188364 LOC106578490 non-coding downstream 187441 78688322 ~ 78688546 (-)
G188654 NA non-coding upstream 42971 78920727 ~ 78920944 (-)
G188834 NA non-coding upstream 143301 79021057 ~ 79021367 (-)
G188891 NA non-coding upstream 223838 79101594 ~ 79101991 (-)
G189117 NA non-coding upstream 281890 79159646 ~ 79159910 (-)
G189118 NA non-coding upstream 282472 79160228 ~ 79160501 (-)
G188257 NA other downstream 258680 78616582 ~ 78617307 (-)
G187579 LOC106561332 other downstream 1172498 77702899 ~ 77703489 (-)
G187490 NA other downstream 1404890 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 1704348 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 2552097 76321757 ~ 76341834 (-)
G189093 slc1a2 other upstream 345474 79223230 ~ 79224998 (-)
G189256 NA other upstream 488093 79365849 ~ 79366569 (-)
G189806 NA other upstream 882283 79760039 ~ 79760627 (-)
G190857 NA other upstream 1674371 80552127 ~ 80552484 (-)
G191669 LOC100380853 other upstream 2037923 80915679 ~ 80921415 (-)

Expression


Co-expression Network