G188946


Basic Information

Item Value
gene id G188946
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79175505 ~ 79175821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214251
tctcaaaagtggggatACAAGTGTGGGGATACAACTCCtcccgactgcaaggcactacagagggtagtgcgtaaggcccagtacataactggggccaagcttcctgccatccaggacctctataccaggctgtgtcagaggaaggtcctaaaaattgtcaaagactccagccaccctagtcatagactgttctctctgctactgcatagCAAGCGGTACCGACGCAccaagtctaagtccaaaaggcttcttaaagcttctacccccaagctataagactcctgaacagctaatctgtaccggtaccccctgtacat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214251 True 317 lncRNA 0.38 1 79175505 79175821

Neighbor

gene id symbol gene type direction distance location
LOC110497132 pamr1 coding upstream 24146 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 244029 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 595315 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 618237 78537027 ~ 78557268 (+)
LOC110496993 LOC106561317 coding upstream 656434 78467699 ~ 78519071 (+)
LOC110497158 LOC106573351 coding downstream 1207 79177028 ~ 79235909 (+)
LOC110497165 lrrc4c coding downstream 741101 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 1548539 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 1604238 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 1815157 80988887 ~ 80994869 (+)
G188945 NA non-coding upstream 77 79175206 ~ 79175428 (+)
G188890 NA non-coding upstream 73782 79101400 ~ 79101723 (+)
G188888 NA non-coding upstream 77625 79097665 ~ 79097880 (+)
G188745 NA non-coding upstream 131122 79044154 ~ 79044383 (+)
G188721 NA non-coding upstream 169186 79001094 ~ 79006319 (+)
G188965 NA non-coding downstream 21267 79197088 ~ 79197592 (+)
G188990 NA non-coding downstream 62828 79238649 ~ 79238895 (+)
G188991 NA non-coding downstream 64231 79240052 ~ 79240610 (+)
G188992 NA non-coding downstream 65847 79241668 ~ 79242328 (+)
G188994 NA non-coding downstream 67794 79243615 ~ 79245118 (+)
G187320 LOC106561323 other upstream 905460 78267289 ~ 78270045 (+)
G187260 NA other upstream 997922 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 1126705 78047373 ~ 78066844 (+)
G191052 NA other downstream 1579320 80755141 ~ 80756647 (+)
G191057 accs other downstream 1589511 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1889733 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1908007 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3190464 82366183 ~ 82393779 (+)

Expression


Co-expression Network