G189093 (slc1a2)


Basic Information

Item Value
gene id G189093
gene name slc1a2
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79223230 ~ 79224998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214411
CCTGGAGGCTGTCCCTAGGGCTGTGATCCAGGCCTGGAAGATGCCCATGAAGAAGGTGTAGGGGTTTTTCCTGACAATGGCAAAGTAGATGGCGGGCAAGAAGATGGCTCCGTGGATGATCAAGCCCACAATTACAGTCACCATGTACATCCCCAATTGCCTAGCAACCACCTCCAGGTCATCGATGGAGATGATCTTACCACAGATCAGGCAGCAGATACCGAAGGGAGAGTACACATGATCATGATGACCAGGTTCATAACAATCTCGTTGAGGATGTTGAAGAACTCCAGCATGAGCTTGGCCctctctcccatcttccccatgcAAATGCCAAAGGCAATGAAGAAGCCAATCACTCCTGCATCACACAGTCAGGATAGGGAATCACAGCTGCATCACACAGTCAGGATAGGGAATCACAGCTGGGAATGAGTAGAGTAAATGGGCTCACGGAGAGATATGAAGACAGAAGATGATAGTGAATGGAGAAGTTGTTTTTATGATGAATCTGCTACAGTTAGGGAGACAGAATTAGCTCCACCCAGGGATCACTTAAagtgtgatactgtatgttatgcaCTGGTTTATTCTCAGACAAATAATTAAAGGCACTTTTAAAAGTGTCATATGCACAATTCCTTTCAGTTGGGCGGTTGTAGAAACAATTGCAGCCTGGTCCAAAAGAGAAGCCCCCATACCCAACACGTTCATGCCACTCTTAAACTGGAGGGTCTTCTTGATGATGAACTCAGGTTCCTTGGTGGCATTGGACAGGAGCCCCTCCAGGGTGGTGGTGGCATTGACGTCCTCCTCAATCACCTTCTCCACCTTCTTAGTGACTGTCTGGATCTGAGGTGGGACAAGAGAACACAGACAAGTCCTTAATATCTTACATCTCAACCCATCTTAACTTTGGTAACAAGGGGCTAAGGATGTAAATACAAAAACATTTAAGTCATTGTGGTCTTCATAAGACTTGTTCTGGGGTTGCCTCATCCAGGCCCTTATTGAC

Function

symbol description
slc1a2 Enables high-affinity glutamate transmembrane transporter activity. Involved in D-aspartate import across plasma membrane; L-glutamate import across plasma membrane; and protein homotrimerization. Located in cell surface. Is integral component of plasma membrane. Part of membrane protein complex and membrane raft. Is integral component of presynaptic membrane. Implicated in developmental and epileptic encephalopathy 41. Biomarker of Huntington's disease and amyotrophic lateral sclerosis.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214411 True 1015 TUCP 0.32 2 79223230 79224998

Neighbor

gene id symbol gene type direction distance location
LOC110497116 fjx1 coding downstream 173268 79047432 ~ 79049962 (-)
LOC110497088 trim44 coding downstream 224968 78926451 ~ 78998262 (-)
LOC110497066 LOC106561314 coding downstream 369765 78710898 ~ 78853465 (-)
LOC110497044 irf7b coding downstream 657274 78560978 ~ 78565956 (-)
LOC110496976 hras coding downstream 829266 78366116 ~ 78393964 (-)
LOC110502122 LOC106561308 coding upstream 18614 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 79318 79304316 ~ 79350048 (-)
ehf ehf coding upstream 161285 79386283 ~ 79393989 (-)
iftap cssa10h11orf74 coding upstream 1483101 80708099 ~ 80725419 (-)
rag1 rag1 coding upstream 1502905 80727903 ~ 80734996 (-)
G189119 NA non-coding downstream 54764 79161114 ~ 79168466 (-)
G189118 NA non-coding downstream 62729 79160228 ~ 79160501 (-)
G189117 NA non-coding downstream 63320 79159646 ~ 79159910 (-)
G188891 NA non-coding downstream 121239 79101594 ~ 79101991 (-)
G188834 NA non-coding downstream 201863 79021057 ~ 79021367 (-)
G189092 slc1a2 non-coding upstream 2133 79227131 ~ 79227960 (-)
G189090 NA non-coding upstream 6269 79231267 ~ 79235823 (-)
G189238 NA non-coding upstream 128528 79353526 ~ 79353823 (-)
G189248 NA non-coding upstream 136269 79361267 ~ 79361550 (-)
G188257 NA other downstream 605923 78616582 ~ 78617307 (-)
G187579 LOC106561332 other downstream 1519741 77702899 ~ 77703489 (-)
G187490 NA other downstream 1752133 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 2051591 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 2899340 76321757 ~ 76341834 (-)
G189256 NA other upstream 140851 79365849 ~ 79366569 (-)
G189806 NA other upstream 535041 79760039 ~ 79760627 (-)
G190857 NA other upstream 1327129 80552127 ~ 80552484 (-)
G191669 LOC100380853 other upstream 1690681 80915679 ~ 80921415 (-)
cart2 LOC105018397 other upstream 1967530 81192528 ~ 81194099 (-)

Expression


Co-expression Network