G189092 (slc1a2)


Basic Information

Item Value
gene id G189092
gene name slc1a2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79227131 ~ 79227960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214408
TCTACCACTACTGAATTGTGAGCGGCATATTGGACGCACTGGTTGGAGTTGTTTTCGTGGTGGTTCTTGAGGTCATCATAGTAGGACGAGGTCTTGTTCATCATCTCAATGTCATCTGACTTGCCATGTGTAGCGTCCAGCTCGTCCAGCTCAGCCTTGGACAGGTGGTACACGATGCCCGCGCCGTATGAGTCTCCCACCACGTTCACTGAGGTACGGAACCGGTCCCTGGGATAGGAAAAAAAGGAATGGGTGGGAATACACCAAAGTGTTGTGTGGAGACAGGAGCCAGTCAACAGCAACCAGCAGGCTGATGTCCTGAGTTGGCAGGCCCACTGCAGTGAGGATCAGAAGCATAGTCACCAGTCCAGCACTGGGAATACTGGCCGCACCAACACTGGCCAGGGTAGCTGTCAGACTGCATGGGGAGAAAGATAGACAGGAGAGAAACCAGTTCATGGTTAAAACTGCTCTACAGATTAAATGTAAA

Function

symbol description
slc1a2 Enables high-affinity glutamate transmembrane transporter activity. Involved in D-aspartate import across plasma membrane; L-glutamate import across plasma membrane; and protein homotrimerization. Located in cell surface. Is integral component of plasma membrane. Part of membrane protein complex and membrane raft. Is integral component of presynaptic membrane. Implicated in developmental and epileptic encephalopathy 41. Biomarker of Huntington's disease and amyotrophic lateral sclerosis.

NR:

description
PREDICTED: excitatory amino acid transporter 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214408 True 490 lncRNA 0.51 2 79227131 79227960

Neighbor

gene id symbol gene type direction distance location
LOC110497116 fjx1 coding downstream 177169 79047432 ~ 79049962 (-)
LOC110497088 trim44 coding downstream 228869 78926451 ~ 78998262 (-)
LOC110497066 LOC106561314 coding downstream 373666 78710898 ~ 78853465 (-)
LOC110497044 irf7b coding downstream 661175 78560978 ~ 78565956 (-)
LOC110496976 hras coding downstream 833167 78366116 ~ 78393964 (-)
LOC110502122 LOC106561308 coding upstream 15652 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 76356 79304316 ~ 79350048 (-)
ehf ehf coding upstream 158323 79386283 ~ 79393989 (-)
iftap cssa10h11orf74 coding upstream 1480139 80708099 ~ 80725419 (-)
rag1 rag1 coding upstream 1499943 80727903 ~ 80734996 (-)
G189119 NA non-coding downstream 58665 79161114 ~ 79168466 (-)
G189118 NA non-coding downstream 66630 79160228 ~ 79160501 (-)
G189117 NA non-coding downstream 67221 79159646 ~ 79159910 (-)
G188891 NA non-coding downstream 125140 79101594 ~ 79101991 (-)
G188834 NA non-coding downstream 205764 79021057 ~ 79021367 (-)
G189090 NA non-coding upstream 3307 79231267 ~ 79235823 (-)
G189238 NA non-coding upstream 125566 79353526 ~ 79353823 (-)
G189248 NA non-coding upstream 133307 79361267 ~ 79361550 (-)
G189560 NA non-coding upstream 299568 79527528 ~ 79625285 (-)
G189093 slc1a2 other downstream 2133 79223230 ~ 79224998 (-)
G188257 NA other downstream 609824 78616582 ~ 78617307 (-)
G187579 LOC106561332 other downstream 1523642 77702899 ~ 77703489 (-)
G187490 NA other downstream 1756034 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 2055492 77166074 ~ 77171661 (-)
G189256 NA other upstream 137889 79365849 ~ 79366569 (-)
G189806 NA other upstream 532079 79760039 ~ 79760627 (-)
G190857 NA other upstream 1324167 80552127 ~ 80552484 (-)
G191669 LOC100380853 other upstream 1687719 80915679 ~ 80921415 (-)
cart2 LOC105018397 other upstream 1964568 81192528 ~ 81194099 (-)

Expression


Co-expression Network