G189090


Basic Information

Item Value
gene id G189090
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79231267 ~ 79235823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214406
TATACCACAGATCTGGTAAAGAAAATaattcagatatttttttgtctttattttgTCATATTCTGTCCCCCAGACATAATGTCTCCCTTTACATCAAAATTACAGCAACAGCTTTACAAATAAGGGACATCCTAGAACAGTAAGCGAGGGAGTGAAAGGTAGGGCAGGAGTGAGAAAGGTTATCAGGTCTACTCAGGAGGAGCCTATCAGAAACACCGAGACTTCTGCAGAATACAGACTTGAAGATATACTGGCTCATCTTAGAAATACTGGGCCAACCCATTTCCATTTGAGCATCCTCTTTACTCAATAttgggtttgtttgtgtgtgtgcaaacaATTGTGATGAAAAAGAAGAAAGGCAAAAAGGTAAATTTAACATTATGTGTGTGGATAGGTTTATGAAATGGTGCTGGTAGGTTGATACTTCTGGATAGACAGAGGCTAGTGTATGGATATGGCACTTGGGCTCGTTACAATTACTGTCTCTAACTGTGAGGAATAATCTAAACATGAAATCTGACTGTTTGGTGTATTTAATTGTGTCTTGTAGTTACCACAATATGATGCATAAAGCACAAGACAGGAGGCGGACACTGATGGTGAGTGTGGTGTTCTCTGATAGAAAGTCTAGATGATTCCTGGAACAGGATCAGGGTGACCACATGAGGAGCTATATTTTGTTAGATGCTAGGCCCGACATTCTGATCAGATTTGCTGTTTTAGTCATAATGAACAAGCTAAGCTGTACTTGTTTCACTAGTTAATAGTACATTTGACCTTTTCCTCTTAATCTGGAGACCTAATCATGATAACATCCACATCTGACCAACTTAGAAACAGCACATCACCCCACATGGACTCCTTTTTTTTAATCAGATAGTTTTTCCTCTTTCTATTTGTCTTTCCAGTTCAACATTGTGCACTTCAGAATCATTGTTATCTCTGGAACATGTATGCACAATGAAAATGAATGGACACAACTTATATCTCTATGGAACAAACATTCAAAACGCTTACATTAGATACAAAAAAAGATATGCATATATTGATGTGTGGCAGCTAAGTGAGAACTAGTTCACAGCtattaacaaataaaaataagCAATTTATTACACTTTATTTTCTAGACATTTTGACTAATCTATTTTTATTCAGAACATAGATAATATTTCTCTAGAGGATTACAAAAAACTGTCACAGCATTTAATCTCTATTCCTACATACcatgtcaacccccccccccctcccaaaaataaaacaaaatatttgTTACCCTCAATATGTACACAAAGTGCAAGGAGGCACTTCAATATCATGCTTTTAAGATAGTGGTGCAAAACAAATATCATCATTTTTAACTTCATGCTCCTACAACAGTGAGTTTGAACAGAATAGTGTTCAAACACTCTCCTTATTGGAGGACAAATTCCTGAAGGTCACAAGGTCAAAGGTCAGGCCCTAGCCCTAGTGCCATCAGGGGTTTTAGTGCTGTGCTCAGCATCTCACTCATTGCATGTTAGAATGTGTGTGGTGACATTCCAGGTTtaattgtgtgcgtgtgtgcatgcaagtgtcggatgtgtgtatgtgttgtgtgcGTCTGTGCATGTATGCAAGTGTGCATacttgtgtgtgcatatgtgtgtgtgcgggcatgggggtgtgtgtgtgtctgtgcgttgtgtctgtgtgtgatggcAGGGTCCATGCAGCTCTTACAACAGAACACCATTGTGTGCTGTGGCATAGAGAAGAACACTTTGTTATACAAGCTCAAAAGCAACGTGGCATTGATATTCTGACTGAGAAAGTTTTTTAGGTAACTAAATGACTGTGTGCTGCACTGTGAATGCTTGTTAAGTTTTCTAGTGTGACTCGGCATTGTTATAACGGTCAAACTGACTGCACAGTTTGGAGTTAAAATCTTCAAAGCAAGGTTGTCAttgaacaaaataaacaaaactaGACCATAGAGCAGGACATGACACAGATAAAGAAATCCACACCTGCAGAACGCCTCACCTGCACAAAATGTCTCTCATACAATCACATACATGCATTAATGATTAGCAGCCAGTGATCAAACTTCATGTGGGTTTATCTTTTTAGCCAGTTTGGTTCCATTAGGGGGATAGAATTCTCCAACCTGATTGTTGCCATGTTTGTAGTGGCCATTTTCAGGCATCAAGATGACTGCTATACATTAGTAACAATATGAGACCAATGATACACACAGCTGCAGCATTCAGGGTCTCTGAGAACAGTCATCATCGTCTGTGGTAATAGGTTGTTTACTCACAAAGGAGACCCCACTCTTGGGGTGGATAAAAATAGTTGGGATGTAAATACTGCCAACTGGCCACTAGTTGTGCAGTGAGTTATCAACCTGTTGAAACTTGCAGTCGTATTACTTTTTTCACTTCTATGGTTGTTCTGTGGCATCTTTGATAATATATGTGTGTTTGTACTTTCAGGCACTAAGGGAAGCCAAGAAAATTGGAGTCACTGGAATGGTAAAATTGGAAAAATTTGAAAATTTGCTGGCTAAAAATAATCCCTTCATTAAAGTATCTTACTTAGTAATAGTTGTAAAGGGAAACTTTGTCTATGTCAAATAGCAAGATATAcaaaaaatgtttatctttaaaaAATATCAAGGTGTTAAACAGTCGGTGTTCAAAGTCAAAGCTTTCATATTTAAGTTGTGCTATATAAAGGCAAGTGTCAATATCCTATGTTCTTTCATGAGCAGGTAAACATGTTGAGGGCTTGGTGAAAGTGTATCTTTCAAGGAGTTAATGCTACAGCCTGAGTATAGTTTCCCTTTATTGGGTTCTTCGAATTACAAATGTCAAATGTGAAAAGAGACCAGTGTCAAAAAGGGATAAAAAAATGATCTATTACTCTTTTATCCTCAAAGCTGCAATTGTGCTATTTGTACTTCTCAgtattacatttattttcagtTTTAGAACAACTTGATTTTTTGCTTGTCATATTTATCAAGATATTTATCGTATCTTGCTAGATCCTTCACAATTTACACTTGATTCTCATTATTTTTAGCATCAGATAGTCAAATAGATAGCTTCAGTGGAAGGGAGAAGGGTCTGATAAATACCTCCTACACTTCTGTACTTGGACTAATTTATATGAAAAACATCCCTGAACTGAAGCTATTGATATATTGGTATCTGGGGACAAATTTCACCTTTACGTTTCTGTTTGAGGCATTGCAGTAATTGCGTGAAGAGATCTTTATGCACCTCTTGGTATATAATTTGCAGGAGTTAAAATGAGTAATGAGACACCTTCTTCACTTGGAGTTAGCTACAAATAGATTGTGTACAGAGTAAGAAACCCCGAAAGACCATATAAATGACCGTCAATAAGTCATGGAGGTTTTTCAAAGGCTTCTGGCTTGATTATATAGCCTGTTTGGTCCCTATTAGTAACTGGGGAGATATGTCATGTTCTCACCCCCAACCCATCCACacagatacagtatataatcTCACACTAGAAGCTAGAAGCGACATTTAAGAAGTCCCTTTCCCTTACAGTAGAAAAAGAACATATTACAATAAAAAAGGGAAGGAGAGGTTCCATGTTTCGTTTGTGTTTTGTGCTTTTGAACTCCAGAGAACATGTGCTTGTGGAGTAAGGCTCAGGTTGCAGACCCTGCCCTTATGTGTCtctctattctacagtatcaCCACAATAATTCCCCCTGGGGATTGTGGGTAATATCAGGTAATAAAGACACTCAGATAGGTCACATGGGCTCTGTCAGGTATAGGTCAAAGGTTAACTTGTGAGGAAAAAGGGACCAGGGCTCAACAGATGCCTACTGTGGTATCATTGGTAATAGTAATGACGTGTGTAATAATGTCAAGTTTGATACAGGCATTCCTTCAGTCTAGCATGACTCAGCTCTTATCTTCCACACATTGTCTGTTGTTAGACTGCCAAATTGCCAGTACCAAACTCACAGCTACAATCAAATTCTGGAGGACTGTTGTTCCATTGTTACTCCCCCAAACTCTGACCCTCCCCCTGCTTTCCCCCTGCTTTGAATGCAGTACTCTTATAGATGCATATATTTATAGGAATAATTTATGTTGTGCAAATGTTTGCTATGAAGCACACATTAGTGCTCTAACAGGTAAAACATACCTTTGTTATCATCTCACCGATGAGTGAATTAGTATTAGTCCTCTTAGTCAGTCAGATAGACGGTTAGAAACACTGTAGGAACTAatacaaacatttcaaaaaagaAATAAAACGACATAAAAAAGAAGACAATTAGTAGTTTTGTTCGCATGACTctttttttcaccagataggaaAGCATGTGGAACTGGGGACCTGTGTGCTGGCTTTATTCACGCTTCTGGGGTTCCTCCTCAACAAGCATGCACTCCGCCATGGTCGCCGCAGCGGTAGAGCCATTTGTGGTCGAGGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214406 True 4474 lncRNA 0.39 3 79231267 79235823

Neighbor

gene id symbol gene type direction distance location
LOC110497116 fjx1 coding downstream 181305 79047432 ~ 79049962 (-)
LOC110497088 trim44 coding downstream 233005 78926451 ~ 78998262 (-)
LOC110497066 LOC106561314 coding downstream 377802 78710898 ~ 78853465 (-)
LOC110497044 irf7b coding downstream 665311 78560978 ~ 78565956 (-)
LOC110496976 hras coding downstream 837303 78366116 ~ 78393964 (-)
LOC110502122 LOC106561308 coding upstream 7789 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 68493 79304316 ~ 79350048 (-)
ehf ehf coding upstream 150460 79386283 ~ 79393989 (-)
iftap cssa10h11orf74 coding upstream 1472276 80708099 ~ 80725419 (-)
rag1 rag1 coding upstream 1492080 80727903 ~ 80734996 (-)
G189092 slc1a2 non-coding downstream 3307 79227131 ~ 79227960 (-)
G189119 NA non-coding downstream 62801 79161114 ~ 79168466 (-)
G189118 NA non-coding downstream 70766 79160228 ~ 79160501 (-)
G189117 NA non-coding downstream 71357 79159646 ~ 79159910 (-)
G188891 NA non-coding downstream 129276 79101594 ~ 79101991 (-)
G189238 NA non-coding upstream 117703 79353526 ~ 79353823 (-)
G189248 NA non-coding upstream 125444 79361267 ~ 79361550 (-)
G189560 NA non-coding upstream 291705 79527528 ~ 79625285 (-)
G189768 NA non-coding upstream 495117 79730940 ~ 79731329 (-)
G189093 slc1a2 other downstream 6269 79223230 ~ 79224998 (-)
G188257 NA other downstream 613960 78616582 ~ 78617307 (-)
G187579 LOC106561332 other downstream 1527778 77702899 ~ 77703489 (-)
G187490 NA other downstream 1760170 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 2059628 77166074 ~ 77171661 (-)
G189256 NA other upstream 130026 79365849 ~ 79366569 (-)
G189806 NA other upstream 524216 79760039 ~ 79760627 (-)
G190857 NA other upstream 1316304 80552127 ~ 80552484 (-)
G191669 LOC100380853 other upstream 1679856 80915679 ~ 80921415 (-)
cart2 LOC105018397 other upstream 1956705 81192528 ~ 81194099 (-)

Expression


Co-expression Network