G188994


Basic Information

Item Value
gene id G188994
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79243615 ~ 79245118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214302
CCTCTATacacatttatttaatccatgaCTTTACACATATTTTCTCATTAACAATGTTTTATTAATTGATCATTACACACTTTCTAATTTTCCTCAAAGTGAATCAAATGAGAGCAAGATCGGAGAGGAACAAAAGCAGAGGCAAAAAGCCACACAAAAAAGCTGGGACACACATTTGTCATGCCGCTTACTCAAAAGGCATGACAAATGTACTGTCAAACTGATATGAGAGGATTCATAATATCCACATAATATCCACAGACAATCACACATAAAAGTGATTTGACTATGAAAGAAAGAGACAGCATAAAGATTATAAtgtaatcagatggaggtgtggAGCAATGGGCACATTGGGACCTGGATCAGTATGGAGAGACAGAGCTCCTAGCCAGAGACACATGGATTCATCAACATCCCTCTCTATGGGGCACATAACAGGGAAAGCCACAGAAATATGATGGCTCTGCTGCTTTGTTACAAAGGAGCCCAGAGAAGTAGAATCCAGAGTTGTGCTTGGAGTTCCACTGTTCTGCCCATTACTGTAATATCTGTGTCCAGATCATGTGTTGTTGTCAGTGTGTCCAGCCAAATCAATTATTTTGTCAGTGAGGGACGCGGTCACTCCTCAGGATTGTACATTGATTTTCATGTTGGCCGTTAACAACAGTTATTAGGTTCCATCACAGTGTAACGCATTACTACACAATTCTAGGACATTGTAAATGGCATATTTCTGTCAATATAGCATATAAGGTGACTTATATGGTAAGTACATGTGATACGTGTACTCCAACATCCACATCTGACCATTGCATCTATTCTCCGAAAGCTGTTCCATATAATCCTATGCGCTACTCAACATGAATGTATTATTTATACAGACCATGTTAATAGACATTGTAAAAAAAGGTTTTGAAAATGCACAGTCTTGAATACTATACATGAAGTTGATTCATACAATATCTACTCTGACTATTGCAAATGTTCTATCACAATCAAAGACCATAGGTTCTGAATTTGATTAAATAATTCTCAAATATGAcagcttttatttattcattAAAGGGCATTGCATGCCAAAAAAGATGAATGACAACTGTTGCTAAGGCATTTGGAAAATACGTGTACATTATATACAGAGACAAAAATAGCAAGAAAAATCCAAACTGCATTAATTAAAATAATAACATCTCGTTGTGTTTCCTTGTAAAAACAAAATCCCAATCCACAGGAAACAACTGAAATATACAGAGGGTTAATATTGAAAGAAAACAGGGGAATGATAAAGAGCATAGACATCAGTGGGCCACAACGTCCCACATTTACCTATCCATAATAAACTATATTAATCCCATGAACATCCAGCCAAATTATCTGACGACGTCTGTTTAGTTTTCACATTTCTGCATGCCTGTTTTTCCAACTCAATGCCTCAAAAGCTTCAAGTGACACATTATCAACAATGTCCTTCCCctcaacctaacccttaacctcaaCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214302 True 1504 lncRNA 0.37 1 79243615 79245118

Neighbor

gene id symbol gene type direction distance location
LOC110497158 LOC106573351 coding upstream 7706 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 92256 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 312139 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 663425 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 686347 78537027 ~ 78557268 (+)
LOC110497165 lrrc4c coding downstream 671804 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 1479242 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 1534941 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 1745860 80988887 ~ 80994869 (+)
LOC110502143 LOC106573336 coding downstream 1784223 81029341 ~ 81031876 (+)
G188992 NA non-coding upstream 1287 79241668 ~ 79242328 (+)
G188991 NA non-coding upstream 3005 79240052 ~ 79240610 (+)
G188990 NA non-coding upstream 4720 79238649 ~ 79238895 (+)
G188965 NA non-coding upstream 46023 79197088 ~ 79197592 (+)
G188946 NA non-coding upstream 67794 79175505 ~ 79175821 (+)
G189241 NA non-coding downstream 111967 79357085 ~ 79357290 (+)
G189253 NA non-coding downstream 119496 79364614 ~ 79364817 (+)
G189385 NA non-coding downstream 281777 79526895 ~ 79625282 (+)
G189606 NA non-coding downstream 381104 79626222 ~ 79626527 (+)
G189789 NA non-coding downstream 521406 79766524 ~ 79766735 (+)
LOC110496993 LOC106561317 other upstream 736683 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 973570 78267289 ~ 78270045 (+)
G187260 NA other upstream 1066032 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 1194815 78047373 ~ 78066844 (+)
G191052 NA other downstream 1510023 80755141 ~ 80756647 (+)
G191057 accs other downstream 1520214 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1820436 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1838710 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3121167 82366183 ~ 82393779 (+)

Expression


Co-expression Network