G189560


Basic Information

Item Value
gene id G189560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79527528 ~ 79625285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214899
gggggagaaaaggtaacataacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacaacatgacagtaagtctctaagagctttgtacacctggattgtacaatatttacccattattataattttttttattcttcaagctaTATCAagttggttattgatcattgttagaaagccattttcaagtcttcccatagatttttaagccaatttaagtcaaactgTTACTacgtcactcaggaacattcaacgtaGTCTTGGTTAGCAACTCGTGTAGATTTggcttgctgaaaggtgaattagtttcccagtgtctgttggaaagaagactgaaacagattttcctctaggattctgcctgtgcttagctctaatacatgtatttttatcctaaaaacctCCCTAGtcgttgctgatgacaagcatccccttaacacgatgcagccaccaccgtgcttgaaaatatgaagagtcgtacacagtgatgtgttgtgttggatttgccccaaacataatccTTTGTATTCAGGCAAAAGTTTATTTCTTTGACACTttttttgacacttttttggcaCTATTGCTTAATAAGTGCCTTGTTGCACACAGGTTGCATGGTTTGAAATCTTTATATTCTGTACAaacttccttattttcactcagTAATTTAATTAAGTTAGCAGTGGAGTAACTACatcgttgttgatccatcctcagttctcataTTACAACTGCTGAATTCaaattgttttaaaatcaccattggcctcaaggtaaaatccctgagcagtttccttcctctctggcaattgagttaggaaggacacctgtatctttgtagtgactggaaaAAGTACTTTGTCATACtagagtaaaagtaaatatacctcaatagaaaataactcaagtaaaagtaaaagtcacccagtaaaatacaaatTGAGTAAAATCTATCTTGTTTTatagtacagtggtggaaaaagtactcaattgccATACTTTGTTCTTCTTTTTTTCCTCTATgtacagccaggggcacactccaaacgCATTTGTTTTTTAgtaagtccgccagatcagatgtAGTAGATATGATAATGCATTAcaggtgcgtgaattggaccatattgcTGTCTTGTCTGAGCATTTGAAATATAACGAGTACtttgggtgtcatggaaaatgtatatgagtaaaagtaaatattttctttgAGATAAATCAAACACTGTCATTGATCAAGTATCCATTGTACAAATAATCTCAAGTATAATATCAAACTGATCAAATTATCATTGGGCCTCCAACAGGGTTGACGATAACAGGGATGAGGTTTAAGGTGAAGATCGGCCATTACTTCTTATGTGGTGAAGAGCATGGGACCACATGGTGTTCATGATATTAGGGATTATATGTTCAACACATAATTAAAGTTTTCGTAACATTAATTTAGCGAACAGGGTTTACGTGTCGAGGTCGACCAAGGCAACCATTTCATGGAACAACCTGGTGAAACTTCAAAAAGACTGCAAAGATGGTTCTGAAAATGTGTTGGTACGTGCAATGCCCCCCAAAGATATGATtcacataaaataaaaaatgcatttgtttttttacttcacattttcaaacagtccatttagattttccaacggggctatacatttggtgAAGTTTTTTTCTCACCAGAGTAGCCTCAATTCACTACCAAAAatgaaattaaaccatctagtgttcagctaaataata
>TU214901
gggggagaaaaggtaacataacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacaacatgacggtaagtctctaagagctttgtacacctggattgtacaatatttacccattattataattttttttattcttcaagctaTATCAagttggttattgatcattgttagaaagccattttcaagtcttcccatagatttttaagccaatttaagtcaaactgTTACTacgtcactcaggaacattcaacgtaGTCTTGGTTAGCAACTCGTGTAGATTTggcttgctgaaaggtgaattagtttcccagtgtctgttggaaagaagactgaaacagattttcctctaggattctgcctgtgcttagctctaatacatgtatttttatcctaaaaacctCCCTAGtcgttgctgatgacaagcatccccttaacacgatgcagccaccaccgtgcttgaaaatatgaagagtcgtacacagtgatgtgttgtgttggatttgccccaaacataatccTTTGTATTCAGGCAAAAGTTTATTTCTTTGACACTttttttgacacttttttggcaCTATTGCTTAATAAGTGCCTTGTTGCACACAGGTTGCATGGTTTGAAATCTTTATATTCTGTACAaacttccttattttcactcagTAATTTAATTAAGTTAGCAGTGGAGTAACTACatcgttgttgatccatcctcagttctcataTTACAACTGCTGAATTCaaattgttttaaaatcaccattggcctcaaggtaaaatccctgagcagtttccttcctctctggcaattgagttaggaaggacacctgtatctttgtagtgactggaaaAAGTACTTTGTCATACtagagtaaaagtaaatatacctcaatagaaaataactcaagtaaaagtaaaagtcacccagtaaaatacaaatTGAGTAAAATCTATCTTGTTTTatagtacagtggtggaaaaagtactcaattgccATACTTTGTTCTTCTTTTTTTCCTCTATgtacagccaggggcacactccaaacgCATTTGTTTTTTAgtaagtccgccagatcagatgtAGTAGATATGATAATGCATTAcaggtgcgtgaattggaccatattgcTGTCTTGTCTGAGCATTTGAAATATAACGAGTACtttgggtgtcatggaaaatgtatatgagtaaaagtaaatattttctttgAGATAAATCAAACACTGTCATTGATCAAGTATCCATTGTACAAATAATCTCAAGTATAATATCAAACTGATCAAATTATCATTGGGCCTCCAACAGGGTTGACGATAACAGGGATGAGGTTTAAGGTGAAGATCGGCCATTACTTCTTATGTGGTGAAGAGCATGGGACCACATGGTGTTCATGATATTAGGGATTATATGTTCAACACATAATTAAAGTTTTCGTAACATTAATTTAGCGAACAGGGTTTACGTGTCGAGGTCGACCAAGGCAACCATTTCATGGAACAACCTGGTGAAACTTCAAAAAGACTGCAAAGATGGTTCTGAAAATGTGTTGGTACGTGCAATGCCCCCCAAAGATATGATtcacataaaataaaaaatgcatttgtttttttacttcacattttcaaacagtccatttagattttccaacggggctatacatttggtgAAGTTTTTTTCTCACCAGAGTAGCCTCAATTCACTACCAAAAatgaaattaaaccatctagtgttcagctaaataata

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214899 False 1761 lncRNA 0.36 2 79527528 79625285
TU214901 True 1761 lncRNA 0.48 2 79527528 79625285

Neighbor

gene id symbol gene type direction distance location
ehf ehf coding downstream 133539 79386283 ~ 79393989 (-)
LOC110502133 pdhx coding downstream 177480 79304316 ~ 79350048 (-)
LOC110502122 LOC106561308 coding downstream 250552 79243612 ~ 79276976 (-)
LOC110497116 fjx1 coding downstream 477566 79047432 ~ 79049962 (-)
LOC110497088 trim44 coding downstream 529266 78926451 ~ 78998262 (-)
iftap cssa10h11orf74 coding upstream 1082814 80708099 ~ 80725419 (-)
rag1 rag1 coding upstream 1102618 80727903 ~ 80734996 (-)
si:ch211-256a21.4 LOC106561345 coding upstream 1129765 80755050 ~ 80765470 (-)
accs accs coding upstream 1140670 80765955 ~ 80776358 (-)
LOC110497262 cib1 coding upstream 1369737 80995022 ~ 80999005 (-)
G189248 NA non-coding downstream 165978 79361267 ~ 79361550 (-)
G189238 NA non-coding downstream 173705 79353526 ~ 79353823 (-)
G189090 NA non-coding downstream 291705 79231267 ~ 79235823 (-)
G189092 slc1a2 non-coding downstream 299568 79227131 ~ 79227960 (-)
G189768 NA non-coding upstream 105655 79730940 ~ 79731329 (-)
G189827 NA non-coding upstream 159064 79784349 ~ 79784610 (-)
G189972 NA non-coding upstream 273294 79898579 ~ 79898802 (-)
G190093 NA non-coding upstream 292223 79917508 ~ 79918835 (-)
G190162 NA non-coding upstream 423707 80048992 ~ 80049194 (-)
G189256 NA other downstream 160959 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 302530 79223230 ~ 79224998 (-)
G188257 NA other downstream 910221 78616582 ~ 78617307 (-)
G187579 LOC106561332 other downstream 1824039 77702899 ~ 77703489 (-)
G187490 NA other downstream 2056431 77470393 ~ 77471675 (-)
G189806 NA other upstream 134754 79760039 ~ 79760627 (-)
G190857 NA other upstream 926842 80552127 ~ 80552484 (-)
G191669 LOC100380853 other upstream 1290394 80915679 ~ 80921415 (-)
cart2 LOC105018397 other upstream 1567243 81192528 ~ 81194099 (-)
G193745 NA other upstream 3276355 82901640 ~ 82912504 (-)

Expression


Co-expression Network