G190024


Basic Information

Item Value
gene id G190024
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79954152 ~ 79960747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU215377
GACAGAGACGCATGGCTGATGGTGCGTGGCCTGTACTCCTCATCATCagctgcctctctccctccctctcttcttttatcgctctccttctctctatataAATATCTGTCTATATCTCTATCTTTCTTCATTTTCCCTCATGCAAGAGATTATCAAAGAAAAGGAAAATATGTCTCCttgcagtgctctctctctctctaacattacTCTTCCTCTCAAGCATTACTCTTTCTCTCAAGCAGTGTTCTCTCTTTCcagcagtgctctctctccctctagcagtggtctctctctctagcagtactctttctctctagcattactctttctctctagcagtggtctctctctctagaactactctttctctctagcattcctctttctctccagcaATACTCagtctctctagcagtgctctctctatctatcagtactctctctctctagcaaaaCTCTTTCTCTTTAGCAGTACTCTTTCTCTCAAACattactctttctctctagcagtgctctctctgtctctagcagtgctctctctctctagcattactctttctctgtagcagtgctctctctctctctatcagtgctctctctgtctagcattactctttctctctagcaaacTCTCTCTCTAGCAATATTCTTTCTCTCtggcagtgctctctctctctatagctgtGCTTTTTCTCTCTAGCATTTCACTTTCTCTCTAgcatactctttctctctagcagtgctctctcgctctctctagcagtactttgtatctctagcagtgctctctctctctagcactcctctctctctctagcagtactctttctctctagcagtactctttctctctagcataacactttctctctagcagtgctctctctctctagcaatactctttctctctagcagtgaactctctctctagcagtgctctctctctctagcagtgctctctctctctagcagtgctctctctctctctagcagtattctttctctctagcataacactttctctctagcagtgctctctctctctctctagcaatactctttctctctagcagtgcactctctctctagcattactctttctctctagcaatcctctctctctagcaatactctttctctctagcagtgctctctctctctagcagtgctctctatctagcagtactctttctctctagcataacactttctctctagtagtgctctctctctctctctagcagtgctctctctctctctctagcagtgctctctctctctagcagtgctctctctctctagcagtactcTTTCTGTCTAGCATTACTCTTtttctctagcagtgctctctctctctagcaatacTGTTTCTCTATAGCagtgcgctctctctctagcattaCTCTTTCTCTCAAGCAATACTCTCTCTCTAGCAATACACTTTCTCTCTAgcatactctttctctctagcaatgctctctctctctagcaatactatgtatctctagcagtgctctctctctctagcactactctctctctagaaaaactctttctctctagcagtgctctctctctctagcagtactctttctctctagcattactctttctctctagcagtgttctctctctctagaagtactctttctctctagcattattctttctctctagcagtggtctctctctctagcagtgctctctctctctctagcagtactctttctctctagcagtggtctctctctctagcagtgctctctctctctctagcagtactcTTTCTGTCTCGAATAACTATTTCTCTCTagcaatactctctctctctagcagtgaactctctctctagcagtgctctctctctctagcagtgctctctctctctctagcagtactctttctctctagcataaaactttctctctagcagtgttctctctctctctagcaatactatttctctctagcagtgaactctctctctagcagtgctctctctctctagcagtgctctctctctctctctctagcagtactctttctctcttgaataactatttctctctagcagtgctctctctctctagcaatactctttctctctagcagtgaactctctctctagcagtgctctctctctctctagcagtgctctctctctctctagcagtactctttctctctagcagtgctctctctctctagcagtgctctttctctctctagcagtactctttctctctagcataacactttctctctagcagtgctctctctctctctagcaatactctttctctctagcagtgaactctctctagcagtgctctctctctctagcagtgctctctctctctctagcagtacaCTTTCTCTCTCGAATAACTATATCTCTCTagcagtgctgtctctctctagcaatactctttctctctagcagtgaactctctctctagcagtgctctctctctctagcagtgctctctctctctctagcagtactctttctctctagcataacactttctctctagcagtgctctctctctctctctagcaatactctttctctctagcagtgcgctctctctctagcattactctttctctctagcaatcctctctctctagcagtgctctctatctagcagtactctttctctctagcataaCACTTtttctctagcagtgctctctctctctctctagcagtgctctctctctct

Function

NR:

description
PREDICTED: calponin homology domain-containing protein DDB_G0272472 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215377 True 2729 lncRNA 0.45 2 79954152 79960747

Neighbor

gene id symbol gene type direction distance location
LOC110497158 LOC106573351 coding upstream 718243 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 802793 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 1022676 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 1373962 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 1396884 78537027 ~ 78557268 (+)
rag2 rag2 coding downstream 763613 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 819312 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 1030231 80988887 ~ 80994869 (+)
LOC110502143 LOC106573336 coding downstream 1068594 81029341 ~ 81031876 (+)
LOC118942351 NA coding downstream 1071252 81031999 ~ 81033476 (+)
G190022 NA non-coding upstream 4976 79948886 ~ 79949176 (+)
G189956 NA non-coding upstream 63410 79890004 ~ 79890742 (+)
G189939 NA non-coding upstream 79038 79874848 ~ 79875114 (+)
G189936 NA non-coding upstream 80289 79873617 ~ 79873863 (+)
G189825 NA non-coding upstream 170586 79783366 ~ 79783566 (+)
G190062 NA non-coding downstream 78936 80039683 ~ 80039883 (+)
G190063 NA non-coding downstream 79464 80040211 ~ 80040444 (+)
G190074 NA non-coding downstream 101421 80062168 ~ 80063084 (+)
G190085 NA non-coding downstream 114347 80075094 ~ 80075378 (+)
G190090 NA non-coding downstream 118628 80079375 ~ 80079592 (+)
LOC110496993 LOC106561317 other upstream 1447220 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 1684107 78267289 ~ 78270045 (+)
G187260 NA other upstream 1776569 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 1905352 78047373 ~ 78066844 (+)
G191052 NA other downstream 794394 80755141 ~ 80756647 (+)
G191057 accs other downstream 804585 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1104807 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1123081 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 2405538 82366183 ~ 82393779 (+)

Expression


Co-expression Network