G190074


Basic Information

Item Value
gene id G190074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80062168 ~ 80063084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU215429
ctattgtccggttgaaatattatttattgtttagacaattgacaacatgagaattaattataaacatcgtttgacatgttttgacaaactttaccggtactattaaGATGTAtttgtctgcatgttttgacttcctttgagccagtggattactgaacaagaCGCTCCaaaaaaacagagtttttgggatataaagagggattttatcgaacaaaacaaacatttattgtgtaggtGGGACTCTTGTcactgcaaccatatgaagatcttcaaaggcaagtgattaattttattgctatttctgacttttgtaattcctttacttgaaaatgtttgtatgcttttgtaagcggtgcgctgtcctcagataattgcatggtatgctttcgccataaagccttttgaaatctgacaaagcggctggattaagtTAATATTTTAGCCGATGTATAACTTgaattttttatgaatgtttattatgactatttctgtattttgaatttggcgctctacaaattcaccggatgttgtcaaagtGGGTCGCTAGCGGAATGCCTGTGCCAGAAAGGTTAATCCAACCGTTCTGTCAGATTTCATAagggctttatggcgaaagcataccacgcgattatctgaggacagcgcccagcacacaaaacattacaaacagttaccagccaagcagaggagtaacaaaagtcagaaatagcaatacaattaatcacttacctttgatgatcttcatatggttgcactcacaagactcccagttacccaataaatgtttgttttgtttgatgaagtccctctttatatccaaaaacctctggtgcgttttgttcagtaatccaatggctccaaggcggtcacaacaggcagacggaAAATCACAAAAGTATCAGTAAAGTTCGTCAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215429 True 917 lncRNA 0.37 1 80062168 80063084

Neighbor

gene id symbol gene type direction distance location
LOC110497165 lrrc4c coding upstream 13986 79916922 ~ 80048182 (+)
LOC110497158 LOC106573351 coding upstream 826259 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 910809 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 1130692 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 1481978 78578149 ~ 78580190 (+)
rag2 rag2 coding downstream 661276 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 716975 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 927894 80988887 ~ 80994869 (+)
LOC110502143 LOC106573336 coding downstream 966257 81029341 ~ 81031876 (+)
LOC118942351 NA coding downstream 968915 81031999 ~ 81033476 (+)
G190063 NA non-coding upstream 21724 80040211 ~ 80040444 (+)
G190062 NA non-coding upstream 22285 80039683 ~ 80039883 (+)
G190024 NA non-coding upstream 101421 79954152 ~ 79960747 (+)
G190022 NA non-coding upstream 112992 79948886 ~ 79949176 (+)
G189956 NA non-coding upstream 171426 79890004 ~ 79890742 (+)
G190085 NA non-coding downstream 12010 80075094 ~ 80075378 (+)
G190090 NA non-coding downstream 16291 80079375 ~ 80079592 (+)
G190182 NA non-coding downstream 24409 80087493 ~ 80087855 (+)
G190193 NA non-coding downstream 30028 80093112 ~ 80093321 (+)
G190202 NA non-coding downstream 34952 80098036 ~ 80098587 (+)
LOC110496993 LOC106561317 other upstream 1555236 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 1792123 78267289 ~ 78270045 (+)
G187260 NA other upstream 1884585 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 2013368 78047373 ~ 78066844 (+)
G191052 NA other downstream 692057 80755141 ~ 80756647 (+)
G191057 accs other downstream 702248 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1002470 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1020744 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 2303201 82366183 ~ 82393779 (+)

Expression


Co-expression Network