G190947 (LOC106581475)


Basic Information

Item Value
gene id G190947
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80618481 ~ 80618736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU216324
gcgtagtgtccagagcatggaggtgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagccctgccagagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgagggcccgacatccacaggtggaggt

Function

NR:

description
PREDICTED: uncharacterized protein LOC109523355 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216324 True 256 lncRNA 0.40 1 80618481 80618736

Neighbor

gene id symbol gene type direction distance location
LOC110497165 lrrc4c coding upstream 570299 79916922 ~ 80048182 (+)
LOC110497158 LOC106573351 coding upstream 1382572 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 1467122 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 1687005 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 2038291 78578149 ~ 78580190 (+)
rag2 rag2 coding downstream 105624 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 161323 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 372242 80988887 ~ 80994869 (+)
LOC110502143 LOC106573336 coding downstream 410605 81029341 ~ 81031876 (+)
LOC118942351 NA coding downstream 413263 81031999 ~ 81033476 (+)
G190946 NA non-coding upstream 222 80618059 ~ 80618259 (+)
G190937 NA non-coding upstream 7116 80611143 ~ 80611365 (+)
G190930 yo84 non-coding upstream 14380 80603788 ~ 80604101 (+)
G190927 NA non-coding upstream 17268 80601002 ~ 80601213 (+)
G190918 NA non-coding upstream 22683 80595480 ~ 80595798 (+)
G190951 NA non-coding downstream 1279 80620015 ~ 80620227 (+)
G190954 NA non-coding downstream 2132 80620868 ~ 80621330 (+)
G190975 NA non-coding downstream 16163 80634899 ~ 80635899 (+)
G190977 NA non-coding downstream 21061 80639797 ~ 80640087 (+)
G190986 NA non-coding downstream 29916 80648652 ~ 80648988 (+)
LOC110496993 LOC106561317 other upstream 2111549 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 2348436 78267289 ~ 78270045 (+)
G187260 NA other upstream 2440898 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 2569681 78047373 ~ 78066844 (+)
G191052 NA other downstream 136405 80755141 ~ 80756647 (+)
G191057 accs other downstream 146596 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 446818 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 465092 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 1747549 82366183 ~ 82393779 (+)

Expression


Co-expression Network