G191727 (LOC106561285)


Basic Information

Item Value
gene id G191727
gene name LOC106561285
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81049541 ~ 81052986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU217191
attgtgtgggggggtggggggttcaTGTGTGTTCATGATGTGGGCAGTATGAGAAAACATCCTGTGACTCACATTCTAAGAACTCCTCTCTGGTCTTGGGCTCCAGAGGTCGAACAATTTGCACTTTCATCACTATGGACACACAAACGTTCGAAATGCCACTACTATTCAGTCAGATATTTCTTGTGTGATCTTAATAAATACATGGTCTACTCTTTGCCTTACCATTTTCAGATATCTTGTCTATTTCCTCCTTGCAGATACCATCCAGTTGCACTTTCAGTCCAGAAACCAATTTCTTCACACGTTCAAAAGAAATGTGTGGATTGAAAGTGGGGCTGGGTAGGGCCTCAGAAccaggagggacagagagtgactggaaactctacagtggaaacaGACAAGAAAATAACTAGTCTAGAGACAGTTTCACTTAGATGGCAACTTAGGAACTATGTGTACAGTGTAGGTATGAAGCCAATGATGTCACCTGAAGGAAATAGATGTGATCCTCTGTGTTTGAGAGCTGCCTGAGCTCAGCATCTCTTCTCTTCATCTCAGTGACTTCCTGATCTAGTCGGTCCAGGAGTCCCTGAACCCGACTCCCTGCAATCCTCTCCTGAGCTCtgatcagctccttcacctcAGAACGCCTTCGCTCAATGGAGCGGATCAGCTCAATAAAGATCCTGTCAGTCGCATCCACTGTCACCTGTGCAGAGCGCGTGAGTGTTTTCACAGCCTGCCTAAGCTCCTgtacctccttctccatctcctgGATTCTCTGGTGGTACTGCTGCTGTATTTTACCCAACTGTTTCTGTTTCTCAGTCCTTTCTGCTGCAACTGACACCGTATCATGGCCTTTATGTTCATCCATCACACACAGCAGACAGATACACTGCCGATCAGTACAGCAGtaaacctccagcagtttgtCATGATGAGGGCAGATCTTCTCCTGTCGTTGTGTGGAGGCTTCGACCAGCTTGTGCTTCTTAAAGGCAAGCGAGTCATAATGAGGCTGGAGATGAGTCTCGCAGTATGAGACAAGACACACCAGACAGTACTTGACAGCTTTGTGTTTTCTCCCAGTGCAGACATCACACTCCACATCTTCAGGTCCAGCATAACAGTGAGCAGATGACGCTTGAGGTCCTGTCCTCTTCAGTTTCTCCACCACTTCAACCAAGACAGTGCTCCTGTTCAGAACAGGCCTTGGGGTGAAGGTATGTCTGCACTGGGGACAGCTGTAGACTCCTTTCAGATCATCCTGATCCCAGCAGCCGTTGATACAACCCATACAGTAGCTATGTCCACAATGTATAGTCACTGGATCCTTTAGTAGATCCAAGCATATTGAACAAAAGAACGGATCTTGGTCTTTTAAAATGGCCTCTGCCATTTTGttgcacacaaacacag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217191 True 1425 lncRNA 0.42 3 81049541 81052986

Neighbor

gene id symbol gene type direction distance location
tmem17 znf774 coding downstream 12355 81034004 ~ 81037186 (-)
LOC110497288 znf774 coding downstream 22111 81024623 ~ 81027430 (-)
LOC110497280 LOC106561298 coding downstream 38627 81008700 ~ 81010914 (-)
LOC110497262 cib1 coding downstream 50536 80995022 ~ 80999005 (-)
accs accs coding downstream 273183 80765955 ~ 80776358 (-)
cart2 LOC105018397 coding upstream 139578 81192528 ~ 81194099 (-)
LOC118942622 NA coding upstream 186044 81232166 ~ 81240770 (-)
LOC110497492 mfs11 coding upstream 253095 81306081 ~ 81309081 (-)
sycp3 scp3 coding upstream 261083 81314069 ~ 81323099 (-)
actr6 arp6 coding upstream 279012 81331998 ~ 81338259 (-)
G191669 LOC100380853 non-coding downstream 128665 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 129613 80914658 ~ 80919928 (-)
G191582 NA non-coding downstream 223795 80805156 ~ 80825746 (-)
G191509 NA non-coding downstream 393531 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 407207 80642121 ~ 80642334 (-)
G191777 paf non-coding upstream 30575 81083561 ~ 81086179 (-)
G191832 rps17 non-coding upstream 89438 81142424 ~ 81185888 (-)
G191890 NA non-coding upstream 179553 81232539 ~ 81297634 (-)
G192224 NA non-coding upstream 442170 81495156 ~ 81495468 (-)
G190857 NA other downstream 497057 80552127 ~ 80552484 (-)
G189806 NA other downstream 1288914 79760039 ~ 79760627 (-)
G189256 NA other downstream 1682972 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1824543 79223230 ~ 79224998 (-)
G193745 NA other upstream 1848654 82901640 ~ 82912504 (-)
G193755 NA other upstream 1952844 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2167036 83219964 ~ 83223972 (-)
G194491 NA other upstream 2562580 83615566 ~ 83616034 (-)

Expression


Co-expression Network