G193735


Basic Information

Item Value
gene id G193735
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82885203 ~ 82889796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU219425
CCAGACCTGTTGAAGCAGCAATAATGCCATGAATCTTTAAGTGTTTCTATAGCCCACtattaaaacaaacaaaacagataCACTAACAGTTAGTAacaaatacagtatattttaaaaaacagacaGGTGATTTTGAAGCTGTGAATGCGTCACTGACTAGCCTCCCCTGCTAACAAACAGCTCTTCTCGGAGCCCACAGGTAAAGAAGGGCCTTGCTTGTGTGTGGATAGGCTAAAAGGCAAGGCTAACTGTGGCCAACTGGGATCCCTGTGCCACAAGCACAATAAAACATTGGTTTGTGGTATATCTAGATTCTAGGGCATCCGCATCAATTGGGAAACAGCACTAGTCTGGGAAACAGTTTCTGAAGCCTCATCAGTCCACAGATAATGGTTTCTCTCATACCCTAGTTTGTCTTATAAGGCGAAAACAAAAAATgcattaaacaaaaaaaaaaaggatgCAAAAGCAGCTGCATGCAATAAGATCAACTGGGCGGGATATAAAAGGAACCAAAAATACAACGAAATCTAACTATACCTTGGATAATGTTTAGGATTTCAAACTGGGACAGGGGCAGTTGAGGTTGACTCTAAccaaagtacagaacagaactCGACTTCCACTCAATGCCACCACACAATGACAATAGGGTGGGCGGCAGCCCTACTGTACAAACATACTTTAACGGTTTCACAATTCAGGGCATTCACAAATACAGTACAATGATATTAGgaaaaaaaaataatcttaaaACAAACTAAAATCATACAACTTTTTTCCTTTTATAGGACCAGCCTGTATCTATGGCACATGCTTTCACAGCTTGCTTGTTGAATGCCATCATCTGTGATCAGGCTCGTGATTGGCACGTCAAATCCAGCCACCAATCGTGTTTCATACTTCCGATTAATCCCATGATacaagaggggaggggagaggggaaagtcGAGAGGGGAAATGCCATACCATTTAATGTGTTGAGAGGTAAGGTGGGACTGATGGTTTGTAATATACTTCTCAGGTATCCATGCAGAAATGGCATGAGGCActtcagacagacaggtagtgGGGGTCCTAGTGGATTGGTGCCTCCCTCAGTATTGAAGTAAATGTGGAGCTCCAGAGACAGTGTTCTTCAGAACTCACAATacacctccatccatcccacCCTCAGAACCGAATCAAAATCATTACTGGCACAAAATGTGAACAAACTTTAAAAAGTAACGACCGTGGCTGGATGGGCTAAAACAGCAGTATTCACACAGGCATTGGAGTTTAAACAGCATAATTTTAAAGATATTTCATGACTTTAGTTCTTTAGTCTTACCTCACATAAGGCTGCCACAAAACCATTATTCATTCAAAGCATGGTGACCATAGACCAATCAGTGTGACCATAGATGGCGGGTGATGGGTTTACTGACATGACCTCAAGCCACCACATTTAAAAAGCATGCTTATCCAGCTTCAGCTTCTTATAGTTTGGTGGGGCAATGGTCAAATGGGCAACTACAAATAAAGTAGCTGGCTATTTTTGTCTTGTCCAGGTCTTGTTACTTGTTTCTTTGTCCATGTGTACCTGTCTTACCAATAGCAAAACAAATTtgatcacaaaaaaaaacaggttaATTTGTTATTTTACATTCAGGGCATTTTTTCCCCCAGTGTGTGTAGGCTACCTATCTCTCGCCCtccaaaacagacacagacaggtagTGGGGGTCGTATTCGAGTGTGTATTGTATATGGCATGTAGTCTATTGATTATGTAGGGTGTGGTGGCCTGCTGACATTACAAGTGTGATTATTCCGAAATTAGGGAGATAGATTTTTCTATTTGAGAAGAATGGATAAACGTACACAAtactagttaaggatactatattTATCATGTTTCAAGTTGgctttattaactacaaaaaggtcaaatgtgtttttatttaaaaTTCTGGTGacgctctgcacacacacacaaagcttctGGTCCAAAGTTAAGCGAACTCTTGGAAGTTCAAAGACGTTCAAAGTTCCttcattgaatctgctcctccgCAAGTATAATGCTGTGatcctaattcagataatgcatgtaaTAACAAAATGCCCAGCGCTTCAAGCCAAGCTTCCTCCACCCTCTATTGCTCGCTCCCTCCCCACCTGAAAAATTTCAGTCACATCTTGTGCCCTACACATGTCTGTCCAATGCATGTAAACATCTATTACAGCTTGCCCACTCCATAGAAAGCTGCTCTATccacactgattggtgaagtaatttaatgttgAGCTAAAGAGGTTTAAAAAGGAAGAGAAAGGAATGATATAAACCATTATTTTTTTAGGGGTTTTGAACCgcttcagaactttattttgctgggcGTAACAGTGGAATGTAACGAAAATAATTATGGTTACAACCCCTGGTTTGAATAATaagcgagagacagagatgtaTATAGATGTTCTGGAATGTTCACTCTGCATAGTAGTCCCTTAAAGAATCCACACACCACAAACGACTCGGTTTACCTCTGAAGTAGCACCTCTGAACGAGCCATATAAGACTGTTGTCTATCAGTGCATTATGACACATGAAATTAAGTCAAAGCATGGGCGTCATAAAGCCGAAAAACGTTGTAAAAGAAAACAACAAATCACTTTACAACAATACCAACGTCTGTACTCCTACGTACTATAGGTGTGTGATATATAGCCTGATAAATAAAATACTGCTACAAGTgataaaaaaaagtgtaaaagATTGAATAAACATGAAATGGAGGAATGAGGGGTGGTTTCTGTTCTGTTGCTCCCTGAGTGATCCCTGATTCAGAGATCATTTATAAACTGTACATTTTGAAATAAGGTATTTGATAAATCTCTATTTTAATAATAGAATTTAAGTCTATTCCCTTAAACCTCCATTTCTGTTTTTAAGAATGTGTCAAGATGGTGGGTGAATGTGGCATTTATCCATACCAGGTCTTCACACGTCGGTCCAAATGCTGTGTGCCAGAGAGTTGGTGGTTAGGCCGTGACACGCCCAGTTACTCTGATGGTGGGAAAATCTCTAAGTGGCACATTGATAGCGGACTATCAGTGACTCTCAATGTCAATGTCAACCAGACCtgtgtatttaagtattttaAAATAATCTGGTGCCGAATCAACTACTTCTATTAGAAGTATTTTCAAATGATTTCCTATAAAATAGCCTACTATTTAAGCATAAGTATTTTCAAATAGTTACTTCCAAATATATTATTTAAAATAAACCTAGGAccaaacagacctgggttcaaaagcATGAGAGTatttaaatatttgtataaatactggttattttcaaatacatgccaATACCTTCCAAGTGTATTGCCAAATGCATTCCAATATTCAAATACTTGTATATTCAAATAAAAATATTTGCGCAAACTCAAAACATATCGCGGAGCGTGTCGGGATAGCACTTCGCTCTAAAGCCTGCAGCCTTGTTTGCTTGGCTGTCTAATTAGCCCCCACACCTATGACAATTTTCACTACCTCTGCTTTGGGACACTTGTGCATATGGCGGAGGCAAGTGTGAAAGCTTAACTGGAGGGTCAAGGGGTGAAGGGAGTGATTTGGGATTCAGCCATAGTCTTATAGGATAGGATGTGACACGTGGGGGCACAAAAAGGCTGCTGCTCAAATAGACCACGCCTCCTAAGGCCACTCcagagatggggagagactgtgggcgcgttcctctgcccaggcgtAGCTGATGCATGACAGACCTTACAAcccctggataggtattttacgtaTCAGCTAATCACATCATATGTTATggcaatctgtcagtcgatgacacagtCAATGACTTGGCACACAATAATTGGTAGACGtatgcaacgtctgagcaggggaacgtgATCTGTAGGTCTGAGGAAAGCAGATACGGACAATTAGCCGCCAAGAATAGTCAAAATGGCCACCTGAAAGGCTTTGTAGGCACAGCCTCagactcttctcttcctcccactGAAAGTGGTGGAGAGCTGTTGTCCCTTATCGCCAATCGATCCCAttgtcttaaaaaaaaaaaatgtaaacagccACCTGAAGATTACACAGCTTATGTGGAAAAAACTAAAACaactaataaataaataaaacatgttttaataagGGAGACGATACCTGGTGATAGAGAGAACTGTACTGAGGGAAATGCTGTGTTTGGGTCGAGTTATTGAGAGCTGTAGTGTGTTTCAGagagGCTTAGAATTTCAGTGAACTGTGGCAAGTTTCAGAGAGATCAGTGCAGTCAATTTTAGTGAGACGTGGAGAGTTTCAGTAGAGATGAGACAAAGAGGGACCAGTTCAGAGGGACCAGTTGATCTCATCCATGACCACGGCCTCGCCCAGATCGGCGTCCGTCTCCAGCAGGCTCATAATCACTGCCATGGCCGCCTCGTCATTACTAAGGCCTCCCAGGCCAGGGTCCATCATATTCTCCATATCCAGCTGGGAAGTTTCC

Function

NR:

description
PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219425 True 4531 lncRNA 0.41 3 82885203 82889796

Neighbor

gene id symbol gene type direction distance location
slc17a8 LOC106561421 coding downstream 37132 82806786 ~ 82848071 (-)
LOC110497735 LOC106561422 coding downstream 94693 82757731 ~ 82790510 (-)
LOC110497727 ube2n coding downstream 144429 82731023 ~ 82740774 (-)
LOC110497714 LOC106561424 coding downstream 154882 82699270 ~ 82730321 (-)
LOC110497706 LOC106561425 coding downstream 195014 82647383 ~ 82690189 (-)
LOC110497815 ric8b coding upstream 118324 83008120 ~ 83022102 (-)
LOC110502165 LOC106561413 coding upstream 137258 83027054 ~ 83057970 (-)
LOC110497820 polr3b coding upstream 179223 83069019 ~ 83111214 (-)
LOC118936835 NA coding upstream 224557 83114353 ~ 83121120 (-)
LOC110497842 LOC106561444 coding upstream 265884 83155680 ~ 83169035 (-)
G193684 NA non-coding downstream 85958 82799029 ~ 82799245 (-)
G193683 NA non-coding downstream 86509 82798466 ~ 82798694 (-)
G193646 NA non-coding downstream 178368 82697955 ~ 82706835 (-)
G193640 NA non-coding downstream 186969 82667391 ~ 82698234 (-)
G193532 NA non-coding downstream 513914 82356820 ~ 82371289 (-)
G193780 LOC106561419 non-coding upstream 54556 82944352 ~ 82945094 (-)
G193786 NA non-coding upstream 62936 82952732 ~ 82954510 (-)
G193789 NA non-coding upstream 68415 82958211 ~ 82958468 (-)
G193792 LOC106561416 non-coding upstream 74929 82964725 ~ 82967122 (-)
G193801 NA non-coding upstream 87702 82977498 ~ 82977697 (-)
cart2 LOC105018397 other downstream 1691358 81192528 ~ 81194099 (-)
G191669 LOC100380853 other downstream 1963788 80915679 ~ 80921415 (-)
G190857 NA other downstream 2332719 80552127 ~ 80552484 (-)
G189806 NA other downstream 3124576 79760039 ~ 79760627 (-)
G189256 NA other downstream 3518634 79365849 ~ 79366569 (-)
G193745 NA other upstream 11844 82901640 ~ 82912504 (-)
G193755 NA other upstream 116034 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 330226 83219964 ~ 83223972 (-)
G194491 NA other upstream 725770 83615566 ~ 83616034 (-)
G195427 NA other upstream 991744 83881540 ~ 83904451 (-)

Expression


Co-expression Network