G193880 (LOC106613263)


Basic Information

Item Value
gene id G193880
gene name LOC106613263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83128123 ~ 83128591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU219587
gatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcaggagtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctaatGAGGTGGTGGATgttcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggtgaatttgccaatcttggtgttctctggcaaatgaaaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccctcataccaccctcatggagtctgtttctgactgtttgagcagacacatgcacatttgtggcctgctggaggtcattttgcagggctctggcagtgctcctccttgcacaaaggtggaggtagcggtcctggtactgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219587 True 469 lncRNA 0.53 1 83128123 83128591

Neighbor

gene id symbol gene type direction distance location
LOC110497837 tmem263 coding upstream 4327 83119221 ~ 83124965 (+)
LOC110497829 LOC106561410 coding upstream 9523 83116088 ~ 83118600 (+)
si:dkey-103i16.6 LOC106561415 coding upstream 125254 82978247 ~ 83002869 (+)
LOC110497803 LOC106561416 coding upstream 154348 82964528 ~ 82973775 (+)
ppfibp1b LOC106561419 coding upstream 174012 82893769 ~ 82954111 (+)
LOC110502176 cry1 coding downstream 74771 83203362 ~ 83204801 (+)
LOC110497849 mterf2 coding downstream 85638 83214229 ~ 83216248 (+)
LOC110497874 btbd11 coding downstream 112678 83241269 ~ 83344652 (+)
LOC110502210 LOC106561405 coding downstream 249056 83377647 ~ 83395033 (+)
LOC110497881 LOC106561403 coding downstream 272368 83400959 ~ 83408768 (+)
G193853 NA non-coding upstream 22289 83104932 ~ 83105834 (+)
G193855 polr3b non-coding upstream 28734 83096564 ~ 83099389 (+)
G193857 NA non-coding upstream 35711 83092076 ~ 83092412 (+)
G193513 NA non-coding upstream 106029 83021796 ~ 83022094 (+)
G193474 NA non-coding upstream 173066 82954831 ~ 82955057 (+)
G193886 NA non-coding downstream 3682 83132273 ~ 83132488 (+)
G193905 NA non-coding downstream 25669 83154260 ~ 83154472 (+)
G193912 NA non-coding downstream 35949 83164540 ~ 83164868 (+)
G193916 NA non-coding downstream 38507 83167098 ~ 83167307 (+)
G193923 NA non-coding downstream 51427 83180018 ~ 83180349 (+)
G193339 LOC106561425 other upstream 473693 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 705941 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 724288 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 739602 82366183 ~ 82393779 (+)
G194395 NA other downstream 430329 83558920 ~ 83559598 (+)
G195155 NA other downstream 1467819 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1881873 85010068 ~ 85054392 (+)
G197069 NA other downstream 3007025 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3908920 87037511 ~ 87039236 (+)

Expression


Co-expression Network