G194301


Basic Information

Item Value
gene id G194301
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83408928 ~ 83410211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU220089
cagcttcatgaggtagtcacctggaatgcatttaaattaacaggtgtgccttgttaaaagttaagtggaatttcattccttcttaatgcatttgagccaatcagttgttgtgacaaggggagtatacagaacatagcccaagaacagctcaaataagcaaagaggaatgacaatccatcattactttaagaaatgaagTTCAGTCAacacggaaaatgtcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcaagctctataatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctctgccgcagaggataagttcattagagttaccaacctcagacaTTGCAGCcccaataaatgcttcatagagttaaagtaaaagacacatctcaacatcaactgttcagagactgtgtgaatcagaccttcatggtcgaattgctgcaaagaaactactccTAAAAggaaaacaagaagaagagacttgcttgggccaagaaacacaagcaatggacattagactggtgcaCATTTGTTCTTTGGTcttgagtccaaattggagatttttggtttcaaccgctgTGTCTTAGTGAGATGTGGTATgaatgaacggatgatctccatatATGCATTTCCCACCCTAAAGcttggaggaggtgttatggtgtggcgGTGATTttctggtgacacggtctgtgatttatttagaattcaaggcacacttaaccagcatgcctaccacagcattctgcagtgatacgccatcccatcgtttgggcttagtgggactatcatttgtttttcaacaggacaatgacccaacacacctccatgctgtgtaaggactatttaaccaagaaggagagtgatggagtgctgtgtcagatgacctggcctccacaatcgcccgacctcaaccaaattgatatgtttgggatgagtcagactgcagaatgaaggaaatgcagccaacaagtgctcagcatatgagaactgcttcaagactgttggataagcattccaggtgaagctgatttagaagatgccaagagtgtgcaaagctgtcatcaaggca
>TU220090
ttctttattttgactattttctacattgtagaataatagtgaagacatcaaaactatgaaataacacatgtagtaaccaaaaagtgttaaacaaatcaaaatatatttgatatttgagattcttcaaatagccaccctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttaaattaacaggtgtgccttgttaaaagttaagtggaatttcattccttcttaatgcatttgagccaatcagttgttgtgacaaggggagtatacagaacatagcccaagaacagctcaaataagcaaagaggaatgacaatccatcattactttaagaaatgaagTTCAGTCAacacggaaaatgtcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcaagctctataatgaaactggctctcatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220089 False 1103 lncRNA 0.43 1 83408928 83410030
TU220090 True 473 lncRNA 0.52 1 83409739 83410211

Neighbor

gene id symbol gene type direction distance location
LOC110497857 cry1 coding downstream 169812 83224373 ~ 83239116 (-)
LOC110502187 NA coding downstream 184956 83219964 ~ 83223972 (-)
LOC110497842 LOC106561444 coding downstream 239893 83155680 ~ 83169035 (-)
LOC118936835 NA coding downstream 287808 83114353 ~ 83121120 (-)
LOC110497820 polr3b coding downstream 297714 83069019 ~ 83111214 (-)
LOC110497937 LOC106561440 coding upstream 325500 83735711 ~ 83777336 (-)
LOC118944150 NA coding upstream 339406 83749617 ~ 83749671 (-)
LOC110497945 LOC106561398 coding upstream 369161 83779372 ~ 83791825 (-)
LOC118942895 NA coding upstream 388293 83798504 ~ 83800597 (-)
LOC110497954 LOC106561396 coding upstream 398994 83809205 ~ 83812698 (-)
G194304 LOC106561403 non-coding downstream 6728 83401811 ~ 83402200 (-)
G194227 NA non-coding downstream 44723 83363987 ~ 83364205 (-)
G194226 NA non-coding downstream 48827 83359893 ~ 83360101 (-)
G194225 NA non-coding downstream 50116 83353864 ~ 83358812 (-)
G194119 NA non-coding downstream 222051 83186494 ~ 83186877 (-)
G194300 NA non-coding upstream 123 83410334 ~ 83410801 (-)
G194308 NA non-coding upstream 15135 83425346 ~ 83426121 (-)
G194331 NA non-coding upstream 49250 83459461 ~ 83464462 (-)
G194350 NA non-coding upstream 81319 83491530 ~ 83491767 (-)
G194426 LOC106561400 non-coding upstream 87443 83497654 ~ 83497958 (-)
G193755 NA other downstream 400952 83005830 ~ 83007976 (-)
G193745 NA other downstream 496424 82901640 ~ 82912504 (-)
cart2 LOC105018397 other downstream 2215083 81192528 ~ 81194099 (-)
G191669 LOC100380853 other downstream 2487513 80915679 ~ 80921415 (-)
G194491 NA other upstream 205355 83615566 ~ 83616034 (-)
G195427 NA other upstream 471329 83881540 ~ 83904451 (-)
G195486 LOC106573171 other upstream 567754 83977965 ~ 83982167 (-)
LOC110498022 LOC106561385 other upstream 1199523 84596433 ~ 84910878 (-)
G197498 slc25a18 other upstream 2426088 85831239 ~ 85843493 (-)

Expression


Co-expression Network