XLOC_002138 (CT573163.1)



Basic Information


Item Value
gene id XLOC_002138
gene name CT573163.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24397098 ~ 24398671 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00004131
CTTTCCCCTACCACCATTTCCAGTCCCCGAAGATTTGCATAGACTTTTCCATTTATCCCTGACAGAAAACAGCAATGTTTGGTGTTATGAAAATAGTTATCTATCTTAAAATCTGCTTTTCTAAAACTGTGCTCTGATatgaaatagaaaataataaatctCCCTCCATTTATCCATCATCAAACAATGCCTCCTAGTGGTCACAAATTGACATTTCTTTGCCTATTACAGCAGAATGGATAGTTATTATAGATAACTATTGAAACCTCTCACCATACATCTTGTTGCTTTTCTGAAACTCGTCATCTCTTAGAAGAGGTTCTGAGCTGTTGTAGTAGGATTCAATGTTTTCTTCCAGGTACCAGGATTTGTTCTCGTCAAACACCATGAAAAGGAGAGCAAATTCTCTGTCCACATCAGTTCTCTGTCTATCCTGGTTCAGTGTTCCCTTCCTGCAGATCATTAATGGCCCAATCAGACCACTGGCTCTGAGCAGTAGGCAAAAGCAATGCAGTTTGGATCAGACACGCCTGGACCGGATTTCTCCGGAATGATCCACTGGT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092226

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00004131 True 563 lncRNA 0.40 2 24397098 24398671

Neighbor


gene id symbol gene type direction distance location
XLOC_002136 NA coding upstream 21938 24316853 ~ 24375160 (+)
XLOC_002137 CU467963.3 coding upstream 43232 24353750 ~ 24353866 (+)
XLOC_002133 gbe1a coding upstream 99056 24048663 ~ 24298042 (+)
XLOC_002135 NA coding upstream 299788 24097055 ~ 24097310 (+)
XLOC_002134 NA coding upstream 300628 24096239 ~ 24096470 (+)
XLOC_002139 NA coding downstream 6019 24404690 ~ 24412025 (+)
XLOC_002140 paxbp1 coding downstream 23346 24422017 ~ 24493323 (+)
XLOC_002141 mtus2a coding downstream 105621 24504292 ~ 24622317 (+)
XLOC_002142 slc46a3 coding downstream 229012 24627683 ~ 24641400 (+)
XLOC_002143 vps36 coding downstream 244408 24643079 ~ 24683770 (+)
XLOC_002132 NA non-coding upstream 404181 23983307 ~ 23992917 (+)
XLOC_002144 NA non-coding downstream 252192 24650863 ~ 24655184 (+)
XLOC_002147 NA non-coding downstream 416633 24815304 ~ 24819159 (+)
XLOC_002148 NA non-coding downstream 436088 24834759 ~ 24835445 (+)
XLOC_002154 NA non-coding downstream 1288963 25687634 ~ 25702407 (+)

Expression



Co-expression Network